Object of class ipDataSource containing
pathway and InterPro domain mappings
geneset
Character vector of entrezgene identifiers
n
Number of subsampling iterations
verbose
Toggle progress report
samples
Logical indicating whether to return the similarity
measures for all the resamples.
Details
Use this function to compute p-values for similarity of the domain
signature of a gene set to all signatures of the pathways defined in
dataSource. You should have created dataSource using
either function dataSource or getKEGGdata.
Value
A list with items
similarity
Named vector of similarity measures for each
pathway
pvalue
The p-values of similarity to each pathway. A named
vector.
and optional item (if samples=TRUE)
dist
A named list containing similarity measures for all the
resamples
Author(s)
Florian Hahne
See Also
gseDomain
Examples
## see Vignette of this package for examples how to use this function