Barplot of percentage of reads falling into expression bins

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

Details

This function makes a barplot of percentage of reads falling into expression bins

Value

nothing Other parameters sent to barplot()

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(dupRadar)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/dupRadar/readcountExpBoxplot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: readcountExpBoxplot
> ### Title: Barplot of percentage of reads falling into expression bins
> ### Aliases: readcountExpBoxplot
> 
> ### ** Examples
> 
> # dm is a duplication matrix calculated by analyzeDuprates:
> # R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
> attach(dupRadar_examples)
> 
> 
> # barplot of percentage of reads falling into expression bins
> readcountExpBoxplot(DupMat=dm)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>