Last data update: 2014.03.03
R: Interactive raw data and result viewer
plotMSlist R Documentation
Interactive raw data and result viewer
Description
View your centroided LC-HRMS data and partitioning / clustering / peak-picking results.
Monitor what peak-picking produces and if it fails; get a grip on optimal parameter settings from comparison with underlying raw data.
Usage
plotMSlist(MSlist, RTlimit = FALSE, mzlimit = FALSE, shiny = FALSE, ppmbar = 8)
Arguments
MSlist
An MSlist returned by readMSdata
, mzpart
, mzclust
or mzpick
RTlimit
Initialize plot: two-element vector of lower and upper RT plot limits. Set to FALSE to view full data.
mzlimit
Initialize plot: two-element vector of lower and upper m/z limits. Set to FALSE to view full data.
shiny
For debugging. Ignore.
ppmbar
Size of m/z bar (in ppm) shown at large zoom
Details
For more help, use the help button in the interactive plot. Based on low-level R plot functionality!
Note
MSlist
may contain a lot of data; rendering of measurements for plotting may thus decrease in speed when zooming out or using the full-view mode.
Author(s)
Martin Loos
See Also
readMSdata
mzagglom
mzclust
mzpick
Results