'pred' for 10-fold CV of prediction error. 'concordance' for random split network concordance using Kendall W.
repl
The number of replicates
Y
mRNA, samples x genes
U
CNA, samples x genes
lambdas
series of relative λs or default=NULL which means let EPoC choose
method
'G' means EPoC G and 'A' means EPoC A.
thr
Threshold for convergence to the LASSO solver
trace
Debug information
...
Extra parameters passed through to the EPoC solver
Details
In the case of 'pred' assess CV prediction error using 10-fold cross-validation with repl replicates.
In the case of 'concordance' assess network concordance using random split and Kendall W with repl replicates.
Value
A list of class plot.EPoC.validation.pred or plot.EPoC.validation.W respectively.