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Last data update: 2014.03.03
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R: Clustering for Flow Cytometry
| flowClust-package | R Documentation |
Clustering for Flow Cytometry
Description
Robust model-based clustering using a t mixture model with Box-Cox transformation.
Details
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Package: | flowClust |
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Type: | Package |
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Version: | 2.0.0 |
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Depends: | R(>= 2.5.0), methods, mnormt, mclust, ellipse, Biobase, flowCore |
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Collate: | SetClasses.R SetMethods.R plot.R flowClust.R SimulateMixture.R |
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biocViews: | Clustering, Statistics, Visualization |
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License: | Artistic-2.0 |
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Built: | R 2.6.1; universal-apple-darwin8.10.1; 2008-03-26 20:54:42; unix |
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Index
boxBox-Cox Transformation
density,flowClust-methodGrid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
dmvtDensity of the Multivariate t Distribution with Box-Cox Tranformation
dmvtmixDensity of the Multivariate t Mixture Distribution with Box-Cox Tranformation
flowClustRobust Model-based Clustering for Flow Cytometry
hist,flowClust-method1-D Density Plot (Histogram) of Clustering Results
Map,flowClust-methodCluster Assignment Based on Clustering Results
miscellaneousVarious Functions for Retrieving Information from Clustering Results
plot,flowClust-methodScatterplot of Clustering Results
plot,flowDens-methodContour or Image Plot of Clustering Results
plot,flowFrame,tmixFilterResult-methodScatterplot / 1-D Density Plot of Filtering (Clustering) Results
rboxReverse Box-Cox Transformation
ruleOutliers,flowClust-methodShowing or Modifying the Rule used to Identify Outliers
show,flowClust-methodShow Method for flowClust / tmixFilterResult Object
show,tmixFilter-methodShow Method for tmixFilter Object
SimulateMixtureRandom Generation from a t Mixture Model with Box-Cox Transformation
split,flowClust-methodSplitting Data Based on Clustering Results
Subset,flowClust-methodSubsetting Data Based on Clustering Results
summary,flowClust-methodSummary Method for flowClust Object
tmixFilterCreating Filters and Filtering Flow Cytometry Data
Note
Further information is available in the vignette.
Author(s)
Raphael Gottardo <raph@stat.ubc.ca>, Kenneth Lo <c.lo@stat.ubc.ca>
Maintainer: Raphael Gottardo <raph@stat.ubc.ca>
References
Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.
Results
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