A class inheriting from flowClust that groups the model and data in a single object.
Objects from the Class
Objects can be created by calls of the form new("flowObj", ...). Has a convenience method flowObj(flowClustObj, flowFrameObj) for creating instances of the class.
Slots
DATA:
An "environment" that holds a pointer to the flowFrame data in position [[1]].
expName:
As described in the flowClust documentation
varNames:
As described in the flowClust documentation
K:
As described in the flowClust documentation
w:
As described in the flowClust documentation
mu:
As described in the flowClust documentation
sigma:
As described in the flowClust documentation
lambda:
As described in the flowClust documentation
nu:
As described in the flowClust documentation
z:
As described in the flowClust documentation
u:
As described in the flowClust documentation
label:
As described in the flowClust documentation
uncertainty:
As described in the flowClust documentation
ruleOutliers:
As described in the flowClust documentation
flagOutliers:
As described in the flowClust documentation
rm.min:
As described in the flowClust documentation
rm.max:
As described in the flowClust documentation
logLike:
As described in the flowClust documentation
BIC:
As described in the flowClust documentation
ICL:
As described in the flowClust documentation
Extends
Class "flowClust", directly.
Methods
getData
signature(obj = "flowObj"): Retreives the contents of the DATA environment
merge
signature(x = "flowObj", y = "missing"): the flowMerge algorithm is called via this function on objects of type flowObj.
plot
signature(x = "flowObj", y = "missing"): A simplified plotting method. Does not require specification of the data since it is contained in the flowObj object. Takes most of the same parameters as plot.flowClust, except the data parameter
Finak G, Bashasharti A, Brinkmann R, Gottardo R. Merging Mixture Model Components for Improved Cell Population Identification in High Throughput Flow Cytometry Data; Advances in Bioinformatics (To Appear)