A factor of length nrow(z) indicating the
row grouping.
fcol
A factor of length ncol(z) indicating the
column grouping.
fillcolours
A character vector of colours from which the
colour map is obtained through interpolation.
bordercolour
Either a character vector of length 1,
specifying the border colour of the heatmap tiles, or NULL or
NA, which indicates that the border colour should match the
fill colour.
zlim
Lower and upper limit of z values represented in the colour
map.
Details
The function can be called within other drawing operations
from the grid package, e.g. within a viewport.
Value
The function is called for its side effect, drawing text and
rectangles on the current viewport.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(geneplotter)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: XML
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/geneplotter/groupedHeatmap.Rd_%03d_medium.png", width=480, height=480)
> ### Name: groupedHeatmap
> ### Title: Heatmap of a matrix with grouped rows and columns
> ### Aliases: groupedHeatmap
>
> ### ** Examples
>
>
> data("mtcars")
>
> groupedHeatmap(
+ scale(mtcars),
+ frow = factor(sapply(strsplit(rownames(mtcars), " "), "[", 1)),
+ fcol = factor(round(seq_len(ncol(mtcars))/3)))
>
>
>
>
>
> dev.off()
null device
1
>