Stacked histogram

Description

Stacked histogram

Usage

histStack(x, breaks, breaksFun=paste, ylab="frequency", ...) 

Arguments

Details

The function calls hist for each element of x and plots the frequencies as a stacked barplot using barplot with beside=FALSE.

Value

The function is called for its side effect, producing a barplot on the active graphics device. It returns the result of the call to barplot.

Author(s)

Wolfgang Huber http://www.ebi.ac.uk/huber

Examples

  x    <- list(rnorm(42), rnorm(42)+2)
  br   <- seq(-3, 5, length=13)
  cols <- c("#1D267B", "#ceffc0")
  histStack(x, breaks=br, col=cols)

  histStack(x, breaks=br, col=cols,
            breaksFun=function(z) paste(signif(z, 3)))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(geneplotter)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/geneplotter/histStack.Rd_%03d_medium.png", width=480, height=480)
> ### Name: histStack
> ### Title: Stacked histogram
> ### Aliases: histStack
> ### Keywords: hplot
> 
> ### ** Examples
> 
>   x    <- list(rnorm(42), rnorm(42)+2)
>   br   <- seq(-3, 5, length=13)
>   cols <- c("#1D267B", "#ceffc0")
>   histStack(x, breaks=br, col=cols)
> 
>   histStack(x, breaks=br, col=cols,
+             breaksFun=function(z) paste(signif(z, 3)))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>