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Last data update: 2014.03.03

R: Chromosome name for each feature

chr	R Documentation

Chromosome name for each feature

Description

Get chromosome name for each feature. Returns character.

Usage

chr(object)

## S4 method for signature 'GenoSet'
chr(object)

## S4 method for signature 'GenomicRanges'
chr(object)

Arguments

object

GRanges GenoSet

Value

character vector of chromosome positions for each feature

Examples

  data(genoset,package="genoset")
  chr(genoset.ds)  # c("chr1","chr1","chr1","chr1","chr3","chr3","chrX","chrX","chrX","chrX")
  chr(rowRanges(genoset.ds))  # The same

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(genoset)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: GenomicRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


*** Genoset API Changes ***
The genoset class has transitioned to the
RangedSummarizedExperiment API from the eSet API (e.g. use colnames instead of sampleNames). ***

Attaching package: 'genoset'

The following object is masked from 'package:GenomicRanges':

    pos

The following objects are masked from 'package:S4Vectors':

    colMeans, colSums, rowMeans, rowSums

The following objects are masked from 'package:base':

    colMeans, colSums, rowMeans, rowSums

Warning messages:
1: multiple methods tables found for 'colMeans' 
2: multiple methods tables found for 'colSums' 
3: multiple methods tables found for 'rowMeans' 
4: multiple methods tables found for 'rowSums' 
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/genoset/chr-methods.Rd_%03d_medium.png", width=480, height=480)
> ### Name: chr
> ### Title: Chromosome name for each feature
> ### Aliases: chr chr,GenoSet-method chr,GenomicRanges-method
> 
> ### ** Examples
> 
>   data(genoset,package="genoset")
>   chr(genoset.ds)  # c("chr1","chr1","chr1","chr1","chr3","chr3","chrX","chrX","chrX","chrX")
   [1] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [10] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [19] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [28] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [37] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [46] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [55] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [64] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [73] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [82] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [91] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [100] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [109] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [118] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [127] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [136] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [145] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [154] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [163] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [172] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [181] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [190] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [199] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [208] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [217] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [226] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [235] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [244] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [253] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [262] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [271] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [280] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [289] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [298] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [307] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [316] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [325] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [334] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [343] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [352] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [361] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [370] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [379] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [388] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [397] "chr8"  "chr8"  "chr8"  "chr8"  "chr12" "chr12" "chr12" "chr12" "chr12"
 [406] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [415] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [424] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [433] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [442] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [451] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [460] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [469] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [478] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [487] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [496] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [505] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [514] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [523] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [532] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [541] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [550] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [559] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [568] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [577] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [586] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [595] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [604] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [613] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [622] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [631] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [640] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [649] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [658] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [667] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [676] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [685] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [694] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [703] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [712] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [721] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [730] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [739] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [748] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [757] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [766] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [775] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [784] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [793] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr17"
 [802] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [811] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [820] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [829] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [838] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [847] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [856] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [865] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [874] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [883] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [892] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [901] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [910] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [919] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [928] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [937] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [946] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [955] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [964] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [973] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [982] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [991] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
[1000] "chr17"
>   chr(rowRanges(genoset.ds))  # The same
   [1] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [10] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [19] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [28] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [37] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [46] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [55] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [64] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [73] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [82] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
  [91] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [100] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [109] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [118] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [127] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [136] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [145] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [154] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [163] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [172] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [181] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [190] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [199] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [208] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [217] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [226] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [235] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [244] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [253] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [262] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [271] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [280] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [289] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [298] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [307] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [316] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [325] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [334] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [343] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [352] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [361] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [370] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [379] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [388] "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8"  "chr8" 
 [397] "chr8"  "chr8"  "chr8"  "chr8"  "chr12" "chr12" "chr12" "chr12" "chr12"
 [406] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [415] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [424] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [433] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [442] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [451] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [460] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [469] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [478] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [487] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [496] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [505] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [514] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [523] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [532] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [541] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [550] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [559] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [568] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [577] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [586] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [595] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [604] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [613] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [622] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [631] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [640] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [649] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [658] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [667] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [676] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [685] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [694] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [703] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [712] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [721] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [730] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [739] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [748] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [757] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [766] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [775] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [784] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12"
 [793] "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr12" "chr17"
 [802] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [811] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [820] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [829] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [838] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [847] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [856] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [865] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [874] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [883] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [892] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [901] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [910] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [919] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [928] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [937] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [946] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [955] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [964] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [973] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [982] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
 [991] "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17" "chr17"
[1000] "chr17"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>