Phenotype dataset

Description

The phenotype data is a numerical vector of length 51. It represents 51 measured phenotypes for 51 laboratory mouse strains. It is to be used as a dependent variable in combination with the SNP genotype data, in order to compute the association between each of the SNPs and the phenotype.

Usage

data(phenotype.snp)

Format

A numerical vecotr with 51 elements (laboratory mice) which correspond to the rows of he genotype data.

Value

Vector of 51 metric elements, representing phenotypes measured for 51 laboratory mice.

Examples

data(phenotype.snp)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(genphen)
Loading required package: randomForest
randomForest 4.6-12
Type rfNews() to see new features/changes/bug fixes.
Loading required package: e1071
Loading required package: ggplot2

Attaching package: 'ggplot2'

The following object is masked from 'package:randomForest':

    margin

Loading required package: effsize
Loading required package: Biostrings
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:randomForest':

    combine

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/genphen/phenotype.snp.Rd_%03d_medium.png", width=480, height=480)
> ### Name: phenotype.snp
> ### Title: Phenotype dataset
> ### Aliases: phenotype.snp
> ### Keywords: dataset
> 
> ### ** Examples
> 
> data(phenotype.snp)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>