TargetRelations

Description

Class used to represent siRNA-to-gene on- and off-target relations for a knockdown library and a set of genes.

Usage

TargetRelations(targets)

## S4 method for signature 'character'
TargetRelations(targets)

## S4 method for signature 'Matrix'
TargetRelations(targets)

Arguments

Value

A TargetRelations object

Slots

siRNAs

The siRNA identifiers

genes

The gene identifiers (Entrez)

path

The path to and .rds TargetRelations file

is.loaded

An indicator if target relations values are loaded

values

The quantitative target relation values between siRNAs and genes

Author(s)

Fabian Schmich

See Also

join

loadValues

unloadValues

writeValues

values

path<-

Examples

trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR")))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(gespeR)
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/gespeR/TargetRelations-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: TargetRelations-class
> ### Title: TargetRelations
> ### Aliases: TargetRelations TargetRelations,Matrix-method
> ###   TargetRelations,character-method TargetRelations-class
> 
> ### ** Examples
> 
> trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR")))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>