annotate.gsp

Description

Query Biomart HGNC symbols for the entrez identifiers of estimated GSPs. Currently, only implemented for species "hsapiens".

Usage

## S4 method for signature 'Phenotypes'
annotate.gsp(object, organism = "hsapiens")

## S4 method for signature 'gespeR'
annotate.gsp(object, organism = "hsapiens")

Arguments

Value

data.frame containing gene identifier, gene symbol and phenotypic score

Author(s)

Fabian Schmich

See Also

gsp

ssp

scores

Examples

data(stabilityfits)
 gspA <- gsp(stabilityfits$A)
## Not run: 
 annotate.gsp(gspA)

## End(Not run)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(gespeR)
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/gespeR/annotate.gsp-methods.Rd_%03d_medium.png", width=480, height=480)
> ### Name: annotate.gsp
> ### Title: annotate.gsp
> ### Aliases: annotate.gsp annotate.gsp,Phenotypes-method
> ###   annotate.gsp,gespeR-method
> 
> ### ** Examples
> 
> data(stabilityfits)
>  gspA <- gsp(stabilityfits$A)
> ## Not run: 
> ##D  annotate.gsp(gspA)
> ## End(Not run)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>