Last data update: 2014.03.03

R: Display axis labels in raw scales
axis_x_inverse_transR Documentation

Display axis labels in raw scales

Description

It is essentially a dummy continous scale and will be instantiated by '+.ggcyto_GatingSet' with 'breaks‘ and ’lables' customized.

Usage

axis_x_inverse_trans(...)

axis_y_inverse_trans(...)

Arguments

...

common continuous scale parameters passed to 'continuous_scale' (not used currently)

Value

a raw_scale object that inherits scale class.

Examples

dataDir <- system.file("extdata",package="flowWorkspaceData")
 gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
 p <- ggcyto(gs, aes(x = CD4, y = CD8), subset = "CD3+") + geom_hex(bins = 64)
 p <- p + geom_gate("CD4") + geom_stats() #plot CD4 gate and it is stats
 p
 p + axis_x_inverse_trans() #inverse transform the x axis into raw scale

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(ggcyto)
Loading required package: ggplot2
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: flowViz
Loading required package: lattice
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
Loading required package: gridExtra
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ggcyto/axis_x_inverse_trans.Rd_%03d_medium.png", width=480, height=480)
> ### Name: axis_x_inverse_trans
> ### Title: Display axis labels in raw scales
> ### Aliases: axis_x_inverse_trans axis_y_inverse_trans
> 
> ### ** Examples
> 
> dataDir <- system.file("extdata",package="flowWorkspaceData")
>  gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
loading R object...
loading tree object...
Done
>  p <- ggcyto(gs, aes(x = CD4, y = CD8), subset = "CD3+") + geom_hex(bins = 64)
>  p <- p + geom_gate("CD4") + geom_stats() #plot CD4 gate and it is stats
>  p
Warning message:
Removed 4 rows containing missing values (geom_hex). 
>  p + axis_x_inverse_trans() #inverse transform the x axis into raw scale
Warning message:
Removed 4 rows containing missing values (geom_hex). 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>