Convert a filterList to a data.table useful for ggplot

Description

It tries to merge with pData that is associated with filterList as attribute 'pd'

Usage

## S3 method for class 'filterList'
fortify(model, data = NULL, nPoints = NULL, ...)

Arguments

Value

data.table

Examples

dataDir <- system.file("extdata",package="flowWorkspaceData")
gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
gates <- getGate(gs, "CD4")
gates <- as(gates, "filterList") #must convert list to filterList in order for the method to dispatch properly
fortify(gates)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ggcyto)
Loading required package: ggplot2
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: flowViz
Loading required package: lattice
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
Loading required package: gridExtra
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ggcyto/fortify.filterList.Rd_%03d_medium.png", width=480, height=480)
> ### Name: fortify.filterList
> ### Title: Convert a filterList to a data.table useful for ggplot
> ### Aliases: fortify.filterList
> 
> ### ** Examples
> 
> dataDir <- system.file("extdata",package="flowWorkspaceData")
> gs <- load_gs(list.files(dataDir, pattern = "gs_manual",full = TRUE))
loading R object...
loading tree object...
Done
> gates <- getGate(gs, "CD4")
> gates <- as(gates, "filterList") #must convert list to filterList in order for the method to dispatch properly
> fortify(gates)
    <B710-A>   <R780-A>               .rownames
 1: 3536.867 1113.68414 CytoTrol_CytoTrol_1.fcs
 2: 3532.656 1247.22087 CytoTrol_CytoTrol_1.fcs
 3: 3520.093 1377.81481 CytoTrol_CytoTrol_1.fcs
 4: 3499.385 1503.32159 CytoTrol_CytoTrol_1.fcs
 5: 3470.870 1621.68041 CytoTrol_CytoTrol_1.fcs
 6: 3435.018 1730.94781 CytoTrol_CytoTrol_1.fcs
 7: 3392.417 1829.32962 CytoTrol_CytoTrol_1.fcs
 8: 3343.767 1915.21043 CytoTrol_CytoTrol_1.fcs
 9: 3289.866 1987.18006 CytoTrol_CytoTrol_1.fcs
10: 3231.600 2044.05678 CytoTrol_CytoTrol_1.fcs
11: 3169.925 2084.90667 CytoTrol_CytoTrol_1.fcs
12: 3105.853 2109.05899 CytoTrol_CytoTrol_1.fcs
13: 3040.438 2116.11714 CytoTrol_CytoTrol_1.fcs
14: 2974.753 2105.96525 CytoTrol_CytoTrol_1.fcs
15: 2909.876 2078.76999 CytoTrol_CytoTrol_1.fcs
16: 2846.874 2034.97791 CytoTrol_CytoTrol_1.fcs
17: 2786.780 1975.30809 CytoTrol_CytoTrol_1.fcs
18: 2730.581 1900.74029 CytoTrol_CytoTrol_1.fcs
19: 2679.199 1812.49892 CytoTrol_CytoTrol_1.fcs
20: 2633.480 1712.03289 CytoTrol_CytoTrol_1.fcs
21: 2594.173 1600.99187 CytoTrol_CytoTrol_1.fcs
22: 2561.923 1481.19913 CytoTrol_CytoTrol_1.fcs
23: 2537.261 1354.62168 CytoTrol_CytoTrol_1.fcs
24: 2520.591 1223.33790 CytoTrol_CytoTrol_1.fcs
25: 2512.187 1089.50348 CytoTrol_CytoTrol_1.fcs
26: 2512.187  955.31597 CytoTrol_CytoTrol_1.fcs
27: 2520.591  822.97874 CytoTrol_CytoTrol_1.fcs
28: 2537.261  694.66474 CytoTrol_CytoTrol_1.fcs
29: 2561.923  572.48090 CytoTrol_CytoTrol_1.fcs
30: 2594.173  458.43347 CytoTrol_CytoTrol_1.fcs
31: 2633.480  354.39511 CytoTrol_CytoTrol_1.fcs
32: 2679.199  262.07411 CytoTrol_CytoTrol_1.fcs
33: 2730.581  182.98640 CytoTrol_CytoTrol_1.fcs
34: 2786.780  118.43059 CytoTrol_CytoTrol_1.fcs
35: 2846.874   69.46668 CytoTrol_CytoTrol_1.fcs
36: 2909.876   36.89866 CytoTrol_CytoTrol_1.fcs
37: 2974.753   21.26130 CytoTrol_CytoTrol_1.fcs
38: 3040.438   22.81135 CytoTrol_CytoTrol_1.fcs
39: 3105.853   41.52338 CytoTrol_CytoTrol_1.fcs
40: 3169.925   77.09012 CytoTrol_CytoTrol_1.fcs
41: 3231.600  128.92758 CytoTrol_CytoTrol_1.fcs
42: 3289.866  196.18457 CytoTrol_CytoTrol_1.fcs
43: 3343.767  277.75676 CytoTrol_CytoTrol_1.fcs
44: 3392.417  372.30471 CytoTrol_CytoTrol_1.fcs
45: 3435.018  478.27597 CytoTrol_CytoTrol_1.fcs
46: 3470.870  593.93047 CytoTrol_CytoTrol_1.fcs
47: 3499.385  717.36919 CytoTrol_CytoTrol_1.fcs
48: 3520.093  846.56525 CytoTrol_CytoTrol_1.fcs
49: 3532.656  979.39727 CytoTrol_CytoTrol_1.fcs
50: 3536.867 1113.68414 CytoTrol_CytoTrol_1.fcs
51: 3536.867 1113.68414 CytoTrol_CytoTrol_1.fcs
    <B710-A>   <R780-A>               .rownames
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>