Create a new ggcyto plot

Description

ggcyto() initializes a ggcyto object that inherits ggplot class. Similarly the + operator can be used to add layers to the existing ggcyto object.

Usage

ggcyto(data = NULL, ...)

## Default S3 method:
ggcyto(data = NULL, mapping = aes(), ...)

Arguments

Details

To invoke ggcyto:

• ggcyto(fs, aes(x, y, <other aesthetics>))

Value

ggcyto object

Examples

data(GvHD)
fs <- GvHD[1:3]
#construct the `ggcyto` object (inherits from `ggplot` class)
p <- ggcyto(fs, aes(x = `FSC-H`))
p + geom_histogram()

# display density/area
p + geom_density()
p + geom_area(stat = "density")

# 2d scatter plot
p <- ggcyto(fs, aes(x = `FSC-H`, y =  `SSC-H`))
p + geom_hex(bins = 128)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(ggcyto)
Loading required package: ggplot2
Loading required package: flowCore
Loading required package: ncdfFlow
Loading required package: flowViz
Loading required package: lattice
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
Loading required package: gridExtra
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ggcyto/ggcyto.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ggcyto-class
> ### Title: Create a new ggcyto plot
> ### Aliases: ggcyto ggcyto-class ggcyto.default ggcyto_GatingLayout-class
> ###   ggcyto_GatingSet-class ggcyto_flowSet-class
> ### Keywords: internal
> 
> ### ** Examples
> 
> data(GvHD)
> fs <- GvHD[1:3]
> #construct the `ggcyto` object (inherits from `ggplot` class)
> p <- ggcyto(fs, aes(x = `FSC-H`))
> p + geom_histogram()
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Warning message:
Removed 3 rows containing missing values (geom_bar). 
> 
> # display density/area
> p + geom_density()
> p + geom_area(stat = "density")
> 
> # 2d scatter plot
> p <- ggcyto(fs, aes(x = `FSC-H`, y =  `SSC-H`))
> p + geom_hex(bins = 128)
Warning message:
Removed 109 rows containing missing values (geom_hex). 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>