gzoom

Description

plots simultaneously a whole phylogenetic tree and a portion of it.

Usage

gzoom.phylo(phy, focus, subtree = FALSE, widths = c(0.3, 0.7))

Arguments

Value

a list of ggplot object

Author(s)

ygc

Examples

require(ape)
data(chiroptera)
gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ggtree)
Loading required package: ggplot2
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ggtree/gzoom.phylo.Rd_%03d_medium.png", width=480, height=480)
> ### Name: gzoom.phylo
> ### Title: gzoom
> ### Aliases: gzoom.phylo
> 
> ### ** Examples
> 
> require(ape)
Loading required package: ape

Attaching package: 'ape'

The following object is masked from 'package:ggtree':

    rotate

> data(chiroptera)
> gzoom(chiroptera, grep("Plecotus", chiroptera$tip.label))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>