R: A graph encoding parts of the MAPK signaling pathway
MAPKsig
R Documentation
A graph encoding parts of the MAPK signaling pathway
Description
A graph encoding parts of the MAPK signaling pathway
Usage
data(MAPKsig)
Format
The format is:
Formal class 'graphNEL' [package "graph"] with edgemode "directed".
Source
The KEGG pancreatic cancer pathway was visually inspected on 17 Sept 2007, and the
subgraph associated with MAPK signaling was isolated. The HUGO names for
each symbol in the KEGG visualization were obtained and checked for
existance on hgu95av2. Some abbreviated terms for processes are also included
as nodes.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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> library(graph)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/graph/MAPKsig.Rd_%03d_medium.png", width=480, height=480)
> ### Name: MAPKsig
> ### Title: A graph encoding parts of the MAPK signaling pathway
> ### Aliases: MAPKsig
> ### Keywords: models
>
> ### ** Examples
>
> data(MAPKsig)
> if (require(Rgraphviz)) {
+ nat = rep(FALSE, length(nodes(MAPKsig)))
+ names(nat) = nodes(MAPKsig)
+ plot(MAPKsig, nodeAttrs=list(fixedsize=nat))
+ }
Loading required package: Rgraphviz
Loading required package: grid
>
>
>
>
>
> dev.off()
null device
1
>