This generic function takes an object that inherits from the graph
class and a node in that graph and returns a vector containing information
about all other nodes that are accessible from the given node. The
methods are vectorized so that index can be a vector.
Usage
## S4 method for signature 'graph,character'
acc(object, index)
## S4 method for signature 'clusterGraph,character'
acc(object, index)
Arguments
object
An instance of the appropriate graph class.
index
A character vector specifying the nodes for which
accessibilty information is wanted.
Value
The methods should return a named list of integer vectors. The
names of the list correspond to the names of the supplied
nodes. For each element of the list the returned vector is named. The
names of the vector elements correspond to the nodes that are
accessible from the given node. The values in the vector indicate how
many edges are between the given node and the node in the return vector.
Methods
object = graph
An object of class graph.
object = clusterGraph
An instance of the clusterGraph
class.
index
A character vector of indices corresponding to nodes in the
graph.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(graph)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/graph/acc-methods.Rd_%03d_medium.png", width=480, height=480)
> ### Name: acc-methods
> ### Title: Methods for Accessibility Lists
> ### Aliases: acc-methods acc,graph-method acc,clusterGraph-method acc
> ### acc,graph,character-method acc,clusterGraph,character-method
> ### Keywords: methods
>
> ### ** Examples
>
> set.seed(123)
> gR3 <- randomGraph(LETTERS[1:10], M<-1:2, p=.5)
> acc(gR3, "A")
$A
B C D E F G H J
1 2 1 2 2 1 1 1
> acc(gR3, c("B", "D"))
$B
A C D E F G H J
1 2 1 2 2 1 1 1
$D
A B C E F G H J
1 1 1 1 1 1 1 1
>
>
>
>
>
> dev.off()
null device
1
>