Map between Manufacturer Identifiers and Entrez Gene

Description

illuminaMousev1p1ENTREZID is an R object that provides mappings between manufacturer identifiers and Entrez Gene identifiers.

Details

Each manufacturer identifier is mapped to a vector of Entrez Gene identifiers. An NA is assigned to those manufacturer identifiers that can not be mapped to an Entrez Gene identifier at this time.

If a given manufacturer identifier can be mapped to different Entrez Gene identifiers from various sources, we attempt to select the common identifiers. If a concensus cannot be determined, we select the smallest identifier.

Mappings were based on data provided by: Entrez Gene ftp://ftp.ncbi.nlm.nih.gov/gene/DATA With a date stamp from the source of: 2015-Mar17

References

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

Examples

        x <- illuminaMousev1p1ENTREZID
        # Get the probe identifiers that are mapped to an ENTREZ Gene ID
        mapped_probes <- mappedkeys(x)
        # Convert to a list
        xx <- as.list(x[mapped_probes])
        if(length(xx) > 0) {
          # Get the ENTREZID for the first five probes
          xx[1:5]
          # Get the first one
          xx[[1]]
        }

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(illuminaMousev1p1.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Mm.eg.db


> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/illuminaMousev1p1.db/illuminaMousev1p1ENTREZID.Rd_%03d_medium.png", width=480, height=480)
> ### Name: illuminaMousev1p1ENTREZID
> ### Title: Map between Manufacturer Identifiers and Entrez Gene
> ### Aliases: illuminaMousev1p1ENTREZID illuminaMousev1p1LOCUSID
> ### Keywords: datasets
> 
> ### ** Examples
> 
>         x <- illuminaMousev1p1ENTREZID
>         # Get the probe identifiers that are mapped to an ENTREZ Gene ID
>         mapped_probes <- mappedkeys(x)
>         # Convert to a list
>         xx <- as.list(x[mapped_probes])
>         if(length(xx) > 0) {
+           # Get the ENTREZID for the first five probes
+           xx[1:5]
+           # Get the first one
+           xx[[1]]
+         }
[1] "24115"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>