Map MGI gene accession numbers with manufacturer identifiers

Description

illuminaMousev1p1MGI is an R object that contains mappings between manufacturer identifiers and Jackson Laboratory MGI gene accession numbers.

Details

This object is a simple mapping of manufacturer identifiers to MGI gene Accession Numbers.

Mappings were based on data provided by: Entrez Gene ftp://ftp.ncbi.nlm.nih.gov/gene/DATA With a date stamp from the source of: 2015-Mar17

Examples

    x <- illuminaMousev1p1MGI
    # Get the manufacturer IDs that are mapped to an MGI ID
    mapped_genes <- mappedkeys(x)
    # Convert to a list
    xx <- as.list(x[mapped_genes])
    if(length(xx) > 0) {
      # Get the MGI IDs for the first five genes
      xx[1:5]
      # Get the first one
      xx[[1]]
    }
    #For the reverse map MGI2EG:
    # Convert to a list
    xx <- as.list(illuminaMousev1p1MGI2PROBE)
    if(length(xx) > 0){
       # Gets the manufacturer IDs for the first five MGI IDs
       xx[1:5]
       # Get the first one
       xx[[1]]
    }

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(illuminaMousev1p1.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Mm.eg.db


> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/illuminaMousev1p1.db/illuminaMousev1p1MGI.Rd_%03d_medium.png", width=480, height=480)
> ### Name: illuminaMousev1p1MGI
> ### Title: Map MGI gene accession numbers with manufacturer identifiers
> ### Aliases: illuminaMousev1p1MGI illuminaMousev1p1MGI2PROBE
> ### Keywords: datasets
> 
> ### ** Examples
> 
>     x <- illuminaMousev1p1MGI
>     # Get the manufacturer IDs that are mapped to an MGI ID
>     mapped_genes <- mappedkeys(x)
>     # Convert to a list
>     xx <- as.list(x[mapped_genes])
>     if(length(xx) > 0) {
+       # Get the MGI IDs for the first five genes
+       xx[1:5]
+       # Get the first one
+       xx[[1]]
+     }
[1] "MGI:MGI:1346332"
>     #For the reverse map MGI2EG:
>     # Convert to a list
>     xx <- as.list(illuminaMousev1p1MGI2PROBE)
>     if(length(xx) > 0){
+        # Gets the manufacturer IDs for the first five MGI IDs
+        xx[1:5]
+        # Get the first one
+        xx[[1]]
+     }
[1] "ILMN_2688905"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>