Bioconductor annotation data package

Description

Welcome to the illuminaRatv1.db annotation Package. The purpose of this package is to provide detailed information about the illuminaRatv1 platform. This package is updated biannually.

You can learn what objects this package supports with the following command:

ls("package:illuminaRatv1.db")

Each of these objects has their own manual page detailing where relevant data was obtained along with some examples of how to use it.

Examples

  ls("package:illuminaRatv1.db")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(illuminaRatv1.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Rn.eg.db


> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/illuminaRatv1.db/illuminaRatv1BASE.Rd_%03d_medium.png", width=480, height=480)
> ### Name: illuminaRatv1.db
> ### Title: Bioconductor annotation data package
> ### Aliases: illuminaRatv1.db illuminaRatv1
> ### Keywords: datasets
> 
> ### ** Examples
> 
>   ls("package:illuminaRatv1.db")
 [1] "illuminaRatv1"                    "illuminaRatv1.db"                
 [3] "illuminaRatv1ACCNUM"              "illuminaRatv1ALIAS2PROBE"        
 [5] "illuminaRatv1ARRAYADDRESS"        "illuminaRatv1CHR"                
 [7] "illuminaRatv1CHRLENGTHS"          "illuminaRatv1CHRLOC"             
 [9] "illuminaRatv1CHRLOCEND"           "illuminaRatv1CODINGZONE"         
[11] "illuminaRatv1ENSEMBL"             "illuminaRatv1ENSEMBL2PROBE"      
[13] "illuminaRatv1ENSEMBLREANNOTATED"  "illuminaRatv1ENTREZID"           
[15] "illuminaRatv1ENTREZREANNOTATED"   "illuminaRatv1ENZYME"             
[17] "illuminaRatv1ENZYME2PROBE"        "illuminaRatv1GENENAME"           
[19] "illuminaRatv1GENOMICLOCATION"     "illuminaRatv1GO"                 
[21] "illuminaRatv1GO2ALLPROBES"        "illuminaRatv1GO2PROBE"           
[23] "illuminaRatv1MAPCOUNTS"           "illuminaRatv1NUID"               
[25] "illuminaRatv1ORGANISM"            "illuminaRatv1ORGPKG"             
[27] "illuminaRatv1OTHERGENOMICMATCHES" "illuminaRatv1OVERLAPPINGSNP"     
[29] "illuminaRatv1PATH"                "illuminaRatv1PATH2PROBE"         
[31] "illuminaRatv1PFAM"                "illuminaRatv1PMID"               
[33] "illuminaRatv1PMID2PROBE"          "illuminaRatv1PROBEQUALITY"       
[35] "illuminaRatv1PROBESEQUENCE"       "illuminaRatv1PROSITE"            
[37] "illuminaRatv1REFSEQ"              "illuminaRatv1REPEATMASK"         
[39] "illuminaRatv1REPORTERGROUPID"     "illuminaRatv1REPORTERGROUPNAME"  
[41] "illuminaRatv1SECONDMATCHES"       "illuminaRatv1SYMBOL"             
[43] "illuminaRatv1SYMBOLREANNOTATED"   "illuminaRatv1UNIGENE"            
[45] "illuminaRatv1UNIPROT"             "illuminaRatv1_dbInfo"            
[47] "illuminaRatv1_dbconn"             "illuminaRatv1_dbfile"            
[49] "illuminaRatv1_dbschema"           "illuminaRatv1fullReannotation"   
[51] "illuminaRatv1listNewMappings"    
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>