A vector of immunoClust-objects with cell.process
clustering results of five samples.
Usage
data("dat.exp")
Details
Cell-event clustering was performed on reduced (10.000 events) sample data of
the dataset of immunoClust, MACS-depleted populations datasets 2010.
URL http://flowrepository.org/id/FR-FCM-ZZWB.
Value
A vector of 5 immnoClust-objects for the
cell clustering results of 5 FC samples.
[[1]]
CD19 MACS-depleted cells
[[2]]
CD15 MACS-depleted cells
[[3]]
CD14 MACS-depleted cells
[[4]]
CD4 MACS-depleted cells
[[4]]
CD3 MACS-depleted cells
Source
http://flowrepository.org/id/FR-FCM-ZZWB
Examples
data(dat.exp)
## process meta clustering
meta <- meta.process(dat.exp, meta.bias=0.6)
## extract event counts in the 5 samples for all meta clusters
res <- meta.numEvents(meta)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(immunoClust)
Loading required package: grid
Loading required package: lattice
Loading required package: flowCore
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/immunoClust/dat.exp.Rd_%03d_medium.png", width=480, height=480)
> ### Name: dat.exp
> ### Title: immunoClust Meta-clustering Sample
> ### Aliases: dat.exp
> ### Keywords: datasets
>
> ### ** Examples
>
> data(dat.exp)
>
> ## process meta clustering
> meta <- meta.process(dat.exp, meta.bias=0.6)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -417035 (58001.1)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -361615 (96348.9)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -356427 (96923.3)
The EM (0) with 4 clusters required 5 iterations, has tolerance 0 and loglike -320472 (113766)
The EM (0) with 5 clusters required 5 iterations, has tolerance 0 and loglike -293923 (134034)
The EM (0) with 6 clusters required 5 iterations, has tolerance 0 and loglike -271096 (148954)
The EM (0) with 6 clusters required 6 iterations, has tolerance 0 and loglike -269543 (150177)
The EM (0) with 7 clusters required 6 iterations, has tolerance 0 and loglike -265420 (151559)
cluster 1 of 1: max. ICL 19174 at 2 with 2 sub-clusters
Fit Model 1 of 10 with 3 clusters
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -361615 (96348.9)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -32433.8 (9853.76)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -31253.1 (10670.7)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -25897.2 (11541.4)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -25897.2 (11541.4)
The EM (0) with 4 clusters required 6 iterations, has tolerance 0 and loglike -23543.7 (13037.1)
The EM (0) with 5 clusters required 6 iterations, has tolerance 0 and loglike -21419.7 (14604.2)
The EM (0) with 6 clusters required 6 iterations, has tolerance 0 and loglike -19893.8 (14404.9)
The EM (0) with 6 clusters required 7 iterations, has tolerance 0 and loglike -20398.4 (13963)
cluster 1 of 2: max. ICL 950 at 6 with 5 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -329191 (86495.2)
The EM (0) with 2 clusters required 6 iterations, has tolerance 0 and loglike -292848 (103709)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -266657 (123605)
The EM (0) with 4 clusters required 5 iterations, has tolerance 0 and loglike -243826 (138526)
The EM (0) with 4 clusters required 6 iterations, has tolerance 0 and loglike -242274 (139749)
The EM (0) with 5 clusters required 6 iterations, has tolerance 0 and loglike -238149 (141131)
The EM (0) with 5 clusters required 7 iterations, has tolerance 0 and loglike -238149 (141131)
The EM (0) with 6 clusters required 7 iterations, has tolerance 0 and loglike -213362 (154720)
cluster 2 of 2: max. ICL 13313 at 5 with 4 sub-clusters
Fit Model 2 of 10 with 11 clusters
The EM (0) with 8 clusters required 6 iterations, has tolerance 0 and loglike -266633 (152245)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -10720.9 (7686.88)
The EM (0) with 2 clusters required 6 iterations, has tolerance 0 and loglike -10720.9 (7686.88)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -9560.28 (7333.62)
The EM (0) with 4 clusters required 6 iterations, has tolerance 0 and loglike -8372.19 (6807.71)
The EM (0) with 4 clusters required 7 iterations, has tolerance 0 and loglike -8372.19 (6807.71)
The EM (0) with 4 clusters required 8 iterations, has tolerance 0 and loglike -8372.19 (6807.71)
cluster 1 of 8: max. ICL 611 at 2 with 2 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
cluster 2 of 8 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -11438.9 (6096.13)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -9714.12 (5972.88)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -8788.02 (6378.95)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -8788.02 (6378.95)
cluster 3 of 8: max. ICL 94 at 3 with 3 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -47935.1 (23051.1)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -34221.5 (31524.4)
The EM (0) with 2 clusters required 6 iterations, has tolerance 0 and loglike -34221.5 (31524.4)
The EM (0) with 2 clusters required 7 iterations, has tolerance 0 and loglike -34221.5 (31524.4)
The EM (0) with 2 clusters required 8 iterations, has tolerance 0 and loglike -34221.5 (31524.4)
The EM (0) with 2 clusters required 9 iterations, has tolerance 0 and loglike -34221.5 (31524.4)
The EM (0) with 3 clusters required 9 iterations, has tolerance 0 and loglike -30666.4 (28461.9)
The EM (0) with 3 clusters required 10 iterations, has tolerance 0 and loglike -30666.4 (28461.9)
cluster 5 of 8: max. ICL 4237 at 2 with 2 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -182391 (112332)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -179117 (113611)
The EM (0) with 2 clusters required 6 iterations, has tolerance 0 and loglike -179117 (113611)
The EM (0) with 4 clusters required 5 iterations, has tolerance 0 and loglike -151027 (129348)
The EM (0) with 5 clusters required 5 iterations, has tolerance 0 and loglike -150809 (129414)
The EM (0) with 6 clusters required 5 iterations, has tolerance 0 and loglike -147446 (129328)
The EM (0) with 7 clusters required 5 iterations, has tolerance 0 and loglike -147431 (129347)
The EM (0) with 8 clusters required 5 iterations, has tolerance 0 and loglike -146420 (129324)
cluster 6 of 8: max. ICL 4254 at 4 with 4 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
cluster 7 of 8 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -4783.4 (-808.369)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -4161.66 (-640.31)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -4200.48 (-608.182)
The EM (0) with 4 clusters required 5 iterations, has tolerance 0 and loglike -4207.83 (-551.109)
The EM (0) with 4 clusters required 6 iterations, has tolerance 0 and loglike -4041.81 (-361.949)
The EM (0) with 5 clusters required 6 iterations, has tolerance 0 and loglike -4026.57 (-284.394)
The EM (0) with 6 clusters required 6 iterations, has tolerance 0 and loglike -3834.75 (-67.2891)
The EM (0) with 8 clusters required 5 iterations, has tolerance 0 and loglike -3725.1 (76.8899)
cluster 8 of 8: max. ICL 124 at 7 with 6 sub-clusters
Fit Model 3 of 10 with 25 clusters
The EM (0) with 13 clusters required 12 iterations, has tolerance 0 and loglike -219792 (178654)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
cluster 1 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
cluster 3 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 2 clusters required 7 iterations, has tolerance 0 and loglike -10558 (6211.36)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
cluster 4 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
cluster 5 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
cluster 6 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
cluster 7 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
cluster 8 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 2 clusters required 6 iterations, has tolerance 0 and loglike -18196.1 (9921.75)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -22583.9 (9314.19)
cluster 9 of 13: max. ICL 304 at 3 with 2 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 7 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 8 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 9 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 10 iterations, has tolerance 0 and loglike -109096 (115692)
cluster 10 of 13 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -1874.54 (71.7242)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -1633.7 (137.475)
The EM (0) with 3 clusters required 5 iterations, has tolerance 0 and loglike -1593.52 (156.524)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -1593.52 (156.524)
cluster 11 of 13: max. ICL 33 at 2 with 2 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
cluster 12 of 13 is OK
Fit Model 4 of 10 with 17 clusters
The EM (0) with 15 clusters required 5 iterations, has tolerance 0 and loglike -215214 (179327)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
cluster 1 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
cluster 3 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 2 clusters required 7 iterations, has tolerance 0 and loglike -10558 (6211.36)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
cluster 4 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
cluster 5 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
cluster 6 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
cluster 7 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
cluster 8 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 7 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 8 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 9 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 10 iterations, has tolerance 0 and loglike -109096 (115692)
cluster 9 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
cluster 10 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -14344 (5944.8)
cluster 12 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
cluster 13 of 15 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -730.193 (37.5609)
The EM (0) with 2 clusters required 5 iterations, has tolerance 0 and loglike -679.75 (56.6094)
cluster 14 of 15: max. ICL 9.5 at 2 with 2 sub-clusters
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -902.043 (99.9143)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -902.043 (99.9143)
cluster 15 of 15 is OK
Fit Model 5 of 10 with 17 clusters
The EM (0) with 16 clusters required 5 iterations, has tolerance 0 and loglike -215205 (179346)
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -1068.35 (-82.6547)
cluster 1 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -8420.49 (5174.26)
cluster 3 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 2 clusters required 7 iterations, has tolerance 0 and loglike -10558 (6211.36)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -12148.4 (6465.41)
cluster 4 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -3727.05 (1772.25)
cluster 5 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -6281.71 (4200.63)
cluster 6 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -11053.5 (6520.8)
cluster 7 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -21864.8 (25504.8)
cluster 8 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -127597 (120029)
The EM (0) with 3 clusters required 6 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 7 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 8 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 9 iterations, has tolerance 0 and loglike -109096 (115692)
The EM (0) with 3 clusters required 10 iterations, has tolerance 0 and loglike -109096 (115692)
cluster 9 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -2973.79 (-406.237)
cluster 10 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 10 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 11 iterations, has tolerance 0 and loglike -14344 (5944.8)
The EM (0) with 1 clusters required 12 iterations, has tolerance 0 and loglike -14344 (5944.8)
cluster 12 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 7 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 8 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
The EM (0) with 1 clusters required 9 iterations, has tolerance 0 and loglike -5023.39 (3976.95)
cluster 13 of 16 is OK
The EM (0) with 1 clusters required 5 iterations, has tolerance 0 and loglike -902.043 (99.9143)
The EM (0) with 1 clusters required 6 iterations, has tolerance 0 and loglike -902.043 (99.9143)
cluster 14 of 16 is OK
Fit Model 6 of 10 with 16 clusters
The EM (0) with 16 clusters required 5 iterations, has tolerance 0 and loglike -215205 (179346)
Scatter Gating
The EM (0) with 6 clusters required 4 iterations, has tolerance 0 and loglike -217770 (176308)
>
> ## extract event counts in the 5 samples for all meta clusters
> res <- meta.numEvents(meta)
>
>
>
>
>
>
> dev.off()
null device
1
>