Get the available curations for a dataset

Description

Get the information about different curations for a given dataset.

Usage

getCurationInfo(dataset);

Arguments

Value

Messages describing the curations are printed.

Examples

getCurationInfo("GSE4635");
##  INSILICODB: 5 curations found.
##
##  INSILICODB: ============================================
##  INSILICODB:  curation id: 14926   (preferred)
##  INSILICODB: ============================================
##  INSILICODB:  curator:   Virginie de Schaetzen
##  INSILICODB:  date:      2011-12-13
##  INSILICODB:  keywords:  Age, Sex, Anatomical Site,
##                          Cell Type, Smoker,Ethnicity,
##                          Cigarette Consumption (pack/years),
##                          platform
##  INSILICODB: 
##  ...

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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Platform: x86_64-pc-linux-gnu (64-bit)

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> library(inSilicoDb)
Loading required package: rjson
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RCurl
Loading required package: bitops
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/inSilicoDb/getCurationInfo.Rd_%03d_medium.png", width=480, height=480)
> ### Name: getCurationInfo
> ### Title: Get the available curations for a dataset
> ### Aliases: getCurationInfo
> 
> ### ** Examples
> 
> getCurationInfo("GSE4635");
  INSILICODB: 9 curations found.
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 37769   (preferred)
  INSILICODB: ============================================
  INSILICODB:  curator:   Zhou Fang
  INSILICODB:  date:      2016-03-29
  INSILICODB:  keywords:  Smoker,tissue,status,age,race,sex,pkyrs,history,patient_id,New Columnasdfadsf
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 36314   
  INSILICODB: ============================================
  INSILICODB:  curator:   Abhishek Raj
  INSILICODB:  date:      2015-07-12
  INSILICODB:  keywords:  Age,Sex,Anatomical Site,Cell Type,Smoker,Ethnicity,Cigarette Consumption (pack/years)
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 36139   
  INSILICODB: ============================================
  INSILICODB:  curator:   Robin Parmar
  INSILICODB:  date:      2015-06-05
  INSILICODB:  keywords:  Age,Sex,Anatomical Site,Cell Type,Smoker,Ethnicity,Cigarette Consumption (pack/years)
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 36138   
  INSILICODB: ============================================
  INSILICODB:  curator:   Robin Parmar
  INSILICODB:  date:      2015-06-05
  INSILICODB:  keywords:  Age,Sex,Anatomical Site,Cell Type,Smoker,Ethnicity,Cigarette Consumption (pack/years)
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 35947   
  INSILICODB: ============================================
  INSILICODB:  curator:   Nirmal selvaraj
  INSILICODB:  date:      2015-05-13
  INSILICODB:  keywords:  Age,Sex,Anatomical Site,Cell Type,Smoker,Ethnicity,Cigarette Consumption (pack/years)
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 14926   
  INSILICODB: ============================================
  INSILICODB:  curator:   Virginie de Schaetzen
  INSILICODB:  date:      2011-12-13
  INSILICODB:  keywords:  Age,Sex,Anatomical Site,Cell Type,Smoker,Ethnicity,Cigarette Consumption (pack/years),platform
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 5092    
  INSILICODB: ============================================
  INSILICODB:  curator:   colin molter
  INSILICODB:  date:      2011-06-28
  INSILICODB:  keywords:  Smoker,tissue,status,age,race,sex,pkyrs,history,patient_id
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 3743    
  INSILICODB: ============================================
  INSILICODB:  curator:   Dmitriy Leyfer
  INSILICODB:  date:      2011-02-04
  INSILICODB:  keywords:  CELL,AGENT
  INSILICODB: 
  INSILICODB: ============================================
  INSILICODB:  curation id: 9016    
  INSILICODB: ============================================
  INSILICODB:  curator:   Gene Expression Omnibus
  INSILICODB:  date:      2006-04-07
  INSILICODB:  keywords:  description,title,source_name,characteristics
  INSILICODB: 
> ##  INSILICODB: 5 curations found.
> ##
> ##  INSILICODB: ============================================
> ##  INSILICODB:  curation id: 14926   (preferred)
> ##  INSILICODB: ============================================
> ##  INSILICODB:  curator:   Virginie de Schaetzen
> ##  INSILICODB:  date:      2011-12-13
> ##  INSILICODB:  keywords:  Age, Sex, Anatomical Site,
> ##                          Cell Type, Smoker,Ethnicity,
> ##                          Cigarette Consumption (pack/years),
> ##                          platform
> ##  INSILICODB: 
> ##  ...
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>