data frame with snp annotation regarding chr6, pertinent to the affy genomewide6 SNP chip

Description

data frame with snp annotation regarding chr6, pertinent to the affy genomewide6 SNP chip

Usage

data(gw6c6.snp240)

Format

A data frame with 56271 observations on the following 7 variables.

man_fsetid

a character vector

dbsnp_rs_id

a character vector

physical_pos

a numeric vector

strand

a numeric vector

allele_a

a character vector

allele_b

a character vector

call240

a numeric vector

Details

an extract from the pd.genomewidesnp.6 metadata

Examples

data(gw6c6.snp240)
str(gw6c6.snp240) 

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ind1KG)
Loading required package: chopsticks
Loading required package: survival
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ind1KG/gw6c6.snp240.Rd_%03d_medium.png", width=480, height=480)
> ### Name: gw6c6.snp240
> ### Title: data frame with snp annotation regarding chr6, pertinent to the
> ###   affy genomewide6 SNP chip
> ### Aliases: gw6c6.snp240
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(gw6c6.snp240)
> str(gw6c6.snp240) 
'data.frame':	56271 obs. of  7 variables:
 $ man_fsetid  : chr  "SNP_A-1984753" "SNP_A-1984758" "SNP_A-1984759" "SNP_A-1984760" ...
 $ dbsnp_rs_id : chr  "rs719065" "rs6927090" "rs815583" "rs1514346" ...
 $ physical_pos: int  110632 197145 230695 334630 374457 428646 677369 729680 732587 732703 ...
 $ strand      : int  1 1 1 0 1 0 0 0 1 0 ...
 $ allele_a    : chr  "C" "A" "C" "A" ...
 $ allele_b    : chr  "T" "C" "T" "G" ...
 $ call240     : int  2 3 2 2 1 1 2 1 1 3 ...
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>