slice of information on transcripts, for ind1KG vignette

Description

slice of information on transcripts, for ind1KG vignette

Usage

data(rsgdf)

Format

A data frame with 73 observations on the following 13 variables.

space

a factor with levels chr6

start

a numeric vector

end

a numeric vector

width

a numeric vector

name

a factor with levels NM_000129 NM_000904 NM_001003698 NM_001003699 ...

score

a numeric vector

strand

a factor with levels + -

thickStart

a numeric vector

thickEnd

a numeric vector

color

a numeric vector

blockCount

a numeric vector

blockSizes

a factor with levels 1013,192,167,230,156,80,739, 1013,192,242,230,156,80,739, 1026, 106,119,123,213,90,164,145,137,190,2911,165,798,2949, ...

blockStarts

a factor with levels 0, 0,10224,16062,19437,21152,22478,25840,27681,28397,30622,31385,34986,35701,37393,39078, 0,107199,143191,169690,283829,351818,509940,, ...

Examples

data(rsgdf)
rsgdf[1:4,]

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ind1KG)
Loading required package: chopsticks
Loading required package: survival
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ind1KG/rsgdf.Rd_%03d_medium.png", width=480, height=480)
> ### Name: rsgdf
> ### Title: slice of information on transcripts, for ind1KG vignette
> ### Aliases: rsgdf
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(rsgdf)
> rsgdf[1:4,]
  space  start    end  width      name score strand thickStart thickEnd color
1  chr6 237101 296355  59255 NM_020185     0      +     237539   295868     0
2  chr6 336752 356443  19692 NM_002460     0      +     338152   352598     0
3  chr6 430138 638109 207972 NM_018303     0      -     431670   582818     0
4  chr6 600939 601964   1026 NM_148959     0      -     601107   601944     0
  blockCount
1          8
2          9
3         28
4          1
                                                                                             blockSizes
1                                                                           460,34,83,50,75,172,73,534,
2                                                                   58,271,187,89,145,108,354,113,3989,
3 1627,60,62,123,56,142,117,67,62,60,81,62,122,158,66,125,126,119,103,82,146,81,125,114,127,177,161,91,
4                                                                                                 1026,
                                                                                                                                                                    blockStarts
1                                                                                                                                  0,12527,19779,43013,53753,56002,56668,58721,
2                                                                                                                                  0,1346,3069,4095,5356,7076,9672,13266,15703,
3 0,3841,5987,12229,14507,47331,64037,68716,70089,70816,71346,77646,78895,79407,79726,87382,91619,107331,112883,113722,113942,124960,132573,134292,144697,147803,152563,207881,
4                                                                                                                                                                            0,
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>