snp.matrix representation of called SNP on chr6 for NA19240

Description

snp.matrix representation of called SNP on chr6 for NA19240

Usage

data(yri240_6)

Format

The format is: List of 2 $ hm2 :Formal class 'snp.matrix' [package "snpMatrix"] with 1 slots .. ..@ .Data: raw [1, 1:265955] 01 01 03 02 ... .. .. ..- attr(*, "dimnames")=List of 2 .. .. .. ..$ : chr "NA19240" .. .. .. ..$ : chr [1:265955] "rs4097465" "rs7754266" "rs9393087" "rs12192290" ... $ supp:'data.frame': 265955 obs. of 5 variables: ..$ dbSNPalleles: Factor w/ 6 levels "A/C","A/G","A/T",..: 6 2 5 3 1 4 6 1 4 5 ... ..$ Assignment : Factor w/ 6 levels "A/C","A/G","A/T",..: 6 2 5 3 1 4 6 1 4 5 ... ..$ Chromosome : Factor w/ 1 level "chr6": 1 1 1 1 1 1 1 1 1 1 ... ..$ Position : int [1:265955] 37012 94609 94901 95272 96774 97749 98500 99536 99694 99750 ... ..$ Strand : Factor w/ 2 levels "+","-": 2 1 1 1 1 1 2 1 1 2 ...

Details

import of hapmap data using read.hapmap.snps

Examples

data(yri240_6)
names(yri240_6)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ind1KG)
Loading required package: chopsticks
Loading required package: survival
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ind1KG/yri240_6.Rd_%03d_medium.png", width=480, height=480)
> ### Name: yri240_6
> ### Title: snp.matrix representation of called SNP on chr6 for NA19240
> ### Aliases: yri240_6
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(yri240_6)
> names(yri240_6)
[1] "hm2"  "supp"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>