Bioconductor annotation data package

Description

Welcome to the indac.db annotation Package. The purpose of this package is to provide detailed information about the indac platform. This package is updated biannually.

Objects in this package are accessed using the select() interface. See ?select in the AnnotationDbi package for details.

See Also

• AnnotationDb-class for use of keys(), columns() and select().

Examples

## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.
columns(indac.db)

## Bimap interface:
## The 'old style' of interacting with these objects is manipulation as 
## bimaps. While this approach is still available we strongly encourage the
## use of select().
ls("package:indac.db")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(indac.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Dm.eg.db


> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/indac.db/indacBASE.Rd_%03d_medium.png", width=480, height=480)
> ### Name: indac.db
> ### Title: Bioconductor annotation data package
> ### Aliases: indac.db indac
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## select() interface:
> ## Objects in this package can be accessed using the select() interface
> ## from the AnnotationDbi package. See ?select for details.
> columns(indac.db)
 [1] "ACCNUM"       "ALIAS"        "ENSEMBL"      "ENSEMBLPROT"  "ENSEMBLTRANS"
 [6] "ENTREZID"     "ENZYME"       "EVIDENCE"     "EVIDENCEALL"  "FLYBASE"     
[11] "FLYBASECG"    "FLYBASEPROT"  "GENENAME"     "GO"           "GOALL"       
[16] "MAP"          "ONTOLOGY"     "ONTOLOGYALL"  "PATH"         "PMID"        
[21] "PROBEID"      "REFSEQ"       "SYMBOL"       "UNIGENE"      "UNIPROT"     
> 
> ## Bimap interface:
> ## The 'old style' of interacting with these objects is manipulation as 
> ## bimaps. While this approach is still available we strongly encourage the
> ## use of select().
> ls("package:indac.db")
 [1] "indac"                "indac.db"             "indacACCNUM"         
 [4] "indacALIAS2PROBE"     "indacCHR"             "indacCHRLENGTHS"     
 [7] "indacCHRLOC"          "indacCHRLOCEND"       "indacENSEMBL"        
[10] "indacENSEMBL2PROBE"   "indacENTREZID"        "indacENZYME"         
[13] "indacENZYME2PROBE"    "indacFLYBASE"         "indacFLYBASE2PROBE"  
[16] "indacFLYBASECG"       "indacFLYBASECG2PROBE" "indacGENENAME"       
[19] "indacGO"              "indacGO2ALLPROBES"    "indacGO2PROBE"       
[22] "indacMAP"             "indacMAPCOUNTS"       "indacORGANISM"       
[25] "indacORGPKG"          "indacPATH"            "indacPATH2PROBE"     
[28] "indacPMID"            "indacPMID2PROBE"      "indacREFSEQ"         
[31] "indacSYMBOL"          "indacUNIGENE"         "indacUNIPROT"        
[34] "indac_dbInfo"         "indac_dbconn"         "indac_dbfile"        
[37] "indac_dbschema"      
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>