A named vector for the length of each of the chromosomes

Description

indacCHRLENGTHS provides the length measured in base pairs for each of the chromosomes.

Details

This is a named vector with chromosome numbers as the names and the corresponding lengths for chromosomes as the values.

Total lengths of chromosomes were derived by calculating the number of base pairs on the sequence string for each chromosome.

See Also

• AnnotationDb-class for use of the select() interface.

Examples

## select() interface:
## Objects in this package can be accessed using the select() interface
## from the AnnotationDbi package. See ?select for details.

## Bimap interface:
tt <- indacCHRLENGTHS
# Length of chromosome 1
tt["1"]

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(indac.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: org.Dm.eg.db


> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/indac.db/indacCHRLENGTHS.Rd_%03d_medium.png", width=480, height=480)
> ### Name: indacCHRLENGTHS
> ### Title: A named vector for the length of each of the chromosomes
> ### Aliases: indacCHRLENGTHS
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## select() interface:
> ## Objects in this package can be accessed using the select() interface
> ## from the AnnotationDbi package. See ?select for details.
> 
> ## Bimap interface:
> tt <- indacCHRLENGTHS
> # Length of chromosome 1
> tt["1"]
<NA> 
  NA 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>