altgr: Open a Shiny Application for ...

Description

This opens a shiny visualization application in the browser based on ...

Usage

altgr(object, ...)

Arguments

Value

Any ...

See Also

http://bioconductor.org/packages/2.13/bioc/html/interactiveDisplay.html

Examples

if(interactive()) {

## Open an browser application for the purpose of manually biclustering an  
## ExpressionSet object and obtaining a GO summary for a specific bicluster.

data(mmgr)
altgr(mmgr)

}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(interactiveDisplay)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/interactiveDisplay/altgr.Rd_%03d_medium.png", width=480, height=480)
> ### Name: altgr
> ### Title: altgr: Open a Shiny Application for ...
> ### Aliases: altgr altgr,ANY-method
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> #if(interactive()) {
> 
> ## Open an browser application for the purpose of manually biclustering an  
> ## ExpressionSet object and obtaining a GO summary for a specific bicluster.
> 
> data(mmgr)
> altgr(mmgr)
Loading required package: GenomicRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: shiny
Loading required package: ggbio
Loading required package: ggplot2
Need specific help about ggbio? try mailing 
 the maintainer or visit http://tengfei.github.com/ggbio/

Attaching package: 'ggbio'

The following objects are masked from 'package:ggplot2':

    geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity,
    xlim


Listening on http://127.0.0.1:6843