Data set used to illustrate local haplotype coding performed with codeHaplo
Usage
data(gDat)
Format
The format is:
Formal class 'GenoDat' [package "inveRsion"] with 4 slots
..@ genoDat : int [1:9, 1:10] 0 1 0 1 0 0 1 0 0 1 ...
.. ..- attr(*, "dimnames")=List of 2
.. .. ..$ : chr [1:9] "V1" "V2" "V3" "V4" ...
.. .. ..$ : NULL
..@ lociPos : Named int [1:10] 959 1268 1393 1467 1531 1761 1847 1987 2006 2030
.. ..- attr(*, "names")= chr [1:10] "V1" "V2" "V3" "V4" ...
..@ alleleSum : num [1:10, 1] 3 1 8 3 9 1 1 9 1 1
..@ noMissCount: num [1:10, 1] 9 9 9 9 9 9 9 9 9 9
Examples
data(gDat)
gDat
plot(gDat)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.
> library(inveRsion)
Loading required package: haplo.stats
Hola!
welcome to inevRsion package.
type: manual() for full manual
vignette("inveRsion") for a quick start
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/inveRsion/gDat.Rd_%03d_medium.png", width=480, height=480)
> ### Name: gDat
> ### Title: Sample data of class genoDat
> ### Aliases: gDat
> ### Keywords: datasets
>
> ### ** Examples
>
> data(gDat)
> gDat
-Showing object of class: GenoDat-
@genoDat: Genotype Data
* integer matrix ~ 9 subjects by 10 probes
* first elements =
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
V1 0 1 1 0 1 0 1 1 0 0
V2 1 0 1 1 1 0 0 1 0 0
V3 0 0 2 0 2 0 0 2 0 0
V4 1 0 1 1 1 0 0 1 0 0
V5 0 0 1 1 1 0 0 1 0 0
V6 0 0 0 0 0 0 0 0 0 0
V7 1 0 0 0 0 1 0 0 1 1
V8 0 0 2 0 2 0 0 2 0 0
V9 0 0 0 0 1 0 0 1 0 0
@lociPos: Probe Corrdinates
* integer ~ 10 probes
* first 10 elements =
V1 V2 V3 V4 V5 V6 V7 V8 V9 V10
959 1268 1393 1467 1531 1761 1847 1987 2006 2030
Other slots...
@allaleSum: allele sum at each probe
@noMissCount: number of no missings values
-end showing GenoDat-
> plot(gDat)
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> dev.off()
null device
1
>