Sample set that illustrates the result of scanning a chromosome with segments of fix window size. It fits the inversion model for each segment and stores its results.
Usage
data(scanRes)
Format
The format is:
Formal class 'scan' [package "inveRsion"] with 10 slots
..@ leftBP : num [1:189, 1] 0.603 0.604 0.606 0.609 0.612 ...
..@ rightBP : num [1:189, 1] 1.15 1.15 1.15 1.15 1.15 ...
..@ leftBP2 : num [1:189, 1] 0.604 0.606 0.608 0.609 0.612 ...
..@ rightBP2: num [1:189, 1] 1.15 1.15 1.15 1.15 1.15 ...
..@ LogLike : num [1:189, 1] 27.2 45.4 89.8 108.2 113.3 ...
..@ prob : num [1:189, 1] 0.996 0.987 0.947 0.936 0.946 ...
..@ ent : num [1:189, 1] 2.41 2.33 2.78 2.87 2.92 ...
..@ entTh : num [1:189, 1] 29 23 26 30 24 28 20 21 24 20 ...
..@ bic : num [1:189, 1] -193.2 -129.4 -107.8 -119.8 -69.1 ...
..@ window : num 0.5
Details
The object is constructed with the function scanInv and used as an input for listInv.
Examples
data(scanRes)
plot(scanRes)
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(inveRsion)
Loading required package: haplo.stats
Hola!
welcome to inevRsion package.
type: manual() for full manual
vignette("inveRsion") for a quick start
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/inveRsion/scanRes.Rd_%03d_medium.png", width=480, height=480)
> ### Name: scanRes
> ### Title: Sample data set of class scan
> ### Aliases: scanRes
> ### Keywords: datasets
>
> ### ** Examples
>
> data(scanRes)
> plot(scanRes)
>
>
>
>
>
> dev.off()
null device
1
>