Supported by Dr. Osamu Ogasawara and  providing  . |
|
Last data update: 2014.03.03 |
|
x |
Bootstrap class object. |
Value
according to the call
print |
console output text with increasing detail of Bootstrap object. |
Author(s)
M L Zingaretti, J A Demey-Zambrano, J L Vicente-Villardon, J R Demey
Examples
{
data(NCI60Selec)
fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
A<-Bootstrap(fit)
print(A)
}
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(kimod)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/kimod/Bootstrap-print.Boot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: print.Bootstrap
> ### Title: 'print' or 'summary' a Bootstrap object
> ### Aliases: print,Bootstrap-method print.Bootstrap
>
> ### ** Examples
>
> {
+ data(NCI60Selec)
+ fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
+ A<-Bootstrap(fit)
+
+ print(A)
+
+
+ }
The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Ratios Boot:
Dim1 Dim2
BR.BT_549 9.5019948 -1.72651252
BR.HS578T 14.6582234 -0.70754965
BR.MCF7 -9.7952391 -1.90264424
BR.MDA_MB_231 7.1984732 -1.77751146
BR.T47D -1.9435340 -1.97564007
CNS.SF_268 15.2402017 -0.83326924
CNS.SF_295 13.9105587 0.02860943
CNS.SF_539 16.6606250 0.17173938
CNS.SNB_19 8.6213432 0.70938258
CNS.SNB_75 17.3399346 1.44141272
CNS.U251 11.7379606 0.01721738
CO.COLO205 -21.0586377 -1.97629300
CO.HCC_2998 -12.1766582 -1.95246462
CO.HCT_116 -7.6752556 -1.97102623
CO.HCT_15 -12.4339029 -2.03111242
CO.HT29 -11.0136669 -2.05541177
CO.KM12 -14.1086000 -2.00790227
CO.SW_620 -15.1408896 -1.93206411
LC.A549 3.2160559 -1.86175351
LC.EKVX 7.4759748 -1.90515275
LC.HOP_62 7.8420535 -1.73770042
LC.HOP_92 9.9368233 -1.39114972
LC.NCI_H226 15.8652408 -1.60417521
LC.NCI_H23 1.8327263 -1.31342291
LC.NCI_H322M 1.1946439 -2.04918477
LC.NCI_H460 -3.1196448 -0.91593119
LC.NCI_H522 -3.1117781 -0.06214778
LE.CCRF_CEM -47.0299903 1.12337375
LE.HL_60 -46.6457203 1.30175334
LE.K_562 -34.1177880 1.56241066
LE.MOLT_4 -52.9171350 0.85888686
LE.RPMI_8226 -32.5937347 1.59835705
LE.SR -25.2840587 0.42050367
ME.LOXIMVI 2.3955982 1.77678332
ME.M14 4.4985822 2.00665746
ME.MALME_3M 5.0647214 2.01677721
ME.MDA_MB_435 1.7979761 2.07756444
ME.MDA_N 1.3327381 2.03281711
ME.SK_MEL_2 2.1801628 2.07054769
ME.SK_MEL_28 4.9573694 2.04482524
ME.SK_MEL_5 -0.3270566 2.10706896
ME.UACC_257 1.2693219 2.06561570
ME.UACC_62 5.7750608 2.10244422
OV.IGROV1 -1.1870894 -1.80906127
OV.NCI_ADR_RES 2.8139602 -1.92698752
OV.OVCAR_3 0.1510541 -1.87148736
OV.OVCAR_4 3.8174448 -1.89056450
OV.OVCAR_5 3.6787630 -1.87519571
OV.OVCAR_8 4.0501973 -1.89478387
OV.SK_OV_3 6.5171231 -2.04831403
PR.DU_145 3.4780662 -1.89408013
PR.PC_3 1.9358980 -1.85051980
RE.786_0 9.5217823 -1.99796452
RE.A498 18.2919405 -1.93810245
RE.ACHN 12.9439087 -1.92700603
RE.CAKI_1 9.4408818 -1.99518213
RE.RXF_393 13.2701823 -1.95727285
RE.SN12C 8.0619658 -1.95246175
RE.TK_10 6.7184467 -1.96784495
RE.UO_31 13.2855893 -1.86769534
Comparision-Boot:
[[1]]
[[1]]$Pos
[1] "BR.BT_549" "BR.HS578T" "BR.MDA_MB_231" "CNS.SF_268"
[5] "CNS.SF_295" "CNS.SF_539" "CNS.SNB_19" "CNS.SNB_75"
[9] "CNS.U251" "LC.A549" "LC.EKVX" "LC.HOP_62"
[13] "LC.HOP_92" "LC.NCI_H226" "ME.M14" "ME.MALME_3M"
[17] "ME.SK_MEL_28" "ME.UACC_62" "OV.OVCAR_4" "OV.OVCAR_5"
[21] "OV.OVCAR_8" "OV.SK_OV_3" "PR.DU_145" "RE.786_0"
[25] "RE.A498" "RE.ACHN" "RE.CAKI_1" "RE.RXF_393"
[29] "RE.SN12C" "RE.TK_10" "RE.UO_31"
[[1]]$Neg
[1] "BR.MCF7" "CO.COLO205" "CO.HCC_2998" "CO.HCT_116" "CO.HCT_15"
[6] "CO.HT29" "CO.KM12" "CO.SW_620" "LC.NCI_H460" "LC.NCI_H522"
[11] "LE.CCRF_CEM" "LE.HL_60" "LE.K_562" "LE.MOLT_4" "LE.RPMI_8226"
[16] "LE.SR"
[[2]]
[[2]]$Pos
[1] "BR.BT_549" "BR.HS578T" "BR.MDA_MB_231" "CNS.SF_268"
[5] "CNS.SF_295" "CNS.SF_539" "CNS.SNB_19" "CNS.SNB_75"
[9] "CNS.U251" "LC.A549" "LC.EKVX" "LC.HOP_62"
[13] "LC.HOP_92" "LC.NCI_H226" "ME.M14" "ME.MALME_3M"
[17] "ME.SK_MEL_28" "ME.UACC_62" "OV.OVCAR_4" "OV.OVCAR_5"
[21] "OV.OVCAR_8" "OV.SK_OV_3" "PR.DU_145" "RE.786_0"
[25] "RE.A498" "RE.ACHN" "RE.CAKI_1" "RE.RXF_393"
[29] "RE.SN12C" "RE.TK_10" "RE.UO_31"
[[2]]$Neg
[1] "BR.MCF7" "CO.COLO205" "CO.HCC_2998" "CO.HCT_116" "CO.HCT_15"
[6] "CO.HT29" "CO.KM12" "CO.SW_620" "LC.NCI_H460" "LC.NCI_H522"
[11] "LE.CCRF_CEM" "LE.HL_60" "LE.K_562" "LE.MOLT_4" "LE.RPMI_8226"
[16] "LE.SR"
Stability-boot:
1 - sum(SumNum)/sum(SumDenom)
1 0.7475259
Representation Quality boot:
LI LS
BR.MCF7 46.00538 64.62112
BR.MDA_MB_231 61.92311 76.38349
BR.HS578T 43.13580 58.70787
BR.BT_549 35.78283 58.48214
BR.T47D 15.33612 32.51998
CNS.SF_268 59.53988 74.63590
Inertia-Boot:
Inertia-Mean Inertia-Sd LI LS
Dim 1 15.689841 0.19111353 15.312974 16.066709
Dim 2 11.590596 0.16239421 11.270362 11.910831
Dim 3 2.697160 0.07551200 2.548254 2.846066
Dim 4 2.555756 0.05381102 2.449643 2.661869
Dim 5 2.460169 0.04409057 2.373224 2.547113
Dim 6 2.392814 0.03661676 2.320607 2.465021
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> dev.off()
null device
1
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and