Supported by Dr. Osamu Ogasawara and  providing  . |
|
Last data update: 2014.03.03 |
|
object |
Bootstrap class object. |
Value
according to the call
summary |
console output text with increasing detail of Bootstrap object. |
Author(s)
M L Zingaretti, J A Demey, J L Vicente-Villardon, J R Demey
Examples
{
data(NCI60Selec)
fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
A<-Bootstrap(fit)
summary(A)
}
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(kimod)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/kimod/Bootstrap-summary.Rd_%03d_medium.png", width=480, height=480)
> ### Name: summary.Bootstrap
> ### Title: 'print.Bootstrap' or 'summary.Bootstrap' a Bootstrap object
> ### Aliases: summary,Bootstrap-method summary.Bootstrap
>
> ### ** Examples
>
> {
+ data(NCI60Selec)
+ fit<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
+ A<-Bootstrap(fit)
+
+
+ summary(A)
+
+ }
The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
Ratios Boot:
Dim1 Dim2
BR.BT_549 10.8543144 -1.55282618
BR.HS578T 17.9740108 -0.67969410
BR.MCF7 -9.6251056 -1.73726157
BR.MDA_MB_231 7.1965218 -1.67004678
BR.T47D -1.9797415 -1.72654946
CNS.SF_268 12.1006514 -0.95927827
CNS.SF_295 12.2676260 0.01955013
CNS.SF_539 17.5514225 0.23267422
CNS.SNB_19 8.0838829 0.86726265
CNS.SNB_75 16.6202968 1.39438451
CNS.U251 10.4456823 0.02917812
CO.COLO205 -17.4197364 -1.75438599
CO.HCC_2998 -11.1581733 -1.76508453
CO.HCT_116 -8.3773639 -1.77973220
CO.HCT_15 -13.6483472 -1.76525286
CO.HT29 -10.0836673 -1.80741089
CO.KM12 -13.7128839 -1.74029098
CO.SW_620 -16.7027018 -1.79117709
LC.A549 2.5249669 -1.83357176
LC.EKVX 7.2732695 -1.47370418
LC.HOP_62 6.7778663 -1.64855103
LC.HOP_92 9.2652239 -1.25987525
LC.NCI_H226 14.2315505 -1.57468245
LC.NCI_H23 2.1561592 -1.22627872
LC.NCI_H322M 0.9004067 -1.83190495
LC.NCI_H460 -3.7335651 -0.94521887
LC.NCI_H522 -3.3235009 0.07151958
LE.CCRF_CEM -41.5360802 1.17197572
LE.HL_60 -47.5699312 1.12645750
LE.K_562 -34.7577972 1.30494467
LE.MOLT_4 -43.1086561 0.90749724
LE.RPMI_8226 -30.0339832 1.43705584
LE.SR -21.7660000 0.27132847
ME.LOXIMVI 2.4458627 1.77538469
ME.M14 4.0823158 1.86026041
ME.MALME_3M 5.3079218 1.86239972
ME.MDA_MB_435 1.4795751 1.85126176
ME.MDA_N 1.3718545 1.81874948
ME.SK_MEL_2 2.4359867 1.80878583
ME.SK_MEL_28 4.8237253 1.83764957
ME.SK_MEL_5 -0.4221908 1.81979269
ME.UACC_257 1.2173044 1.83471739
ME.UACC_62 4.7489822 1.84585245
OV.IGROV1 -1.1967382 -1.77882743
OV.NCI_ADR_RES 2.2252760 -1.73529926
OV.OVCAR_3 0.1649936 -1.65927487
OV.OVCAR_4 3.3216281 -1.78989126
OV.OVCAR_5 3.4555448 -1.77004641
OV.OVCAR_8 4.2297962 -1.86249413
OV.SK_OV_3 6.0004962 -1.84753380
PR.DU_145 4.1146231 -1.74470939
PR.PC_3 2.2819891 -1.70646580
RE.786_0 10.0457301 -1.75653076
RE.A498 17.9488798 -1.74791669
RE.ACHN 11.6135931 -1.71750678
RE.CAKI_1 9.4642436 -1.75563742
RE.RXF_393 14.5315077 -1.78641481
RE.SN12C 8.6849798 -1.65338287
RE.TK_10 7.2381818 -1.75624059
RE.UO_31 13.9796066 -1.80211673
Comparision-Boot:
[[1]]
[[1]]$Pos
[1] "BR.BT_549" "BR.HS578T" "BR.MDA_MB_231" "CNS.SF_268"
[5] "CNS.SF_295" "CNS.SF_539" "CNS.SNB_19" "CNS.SNB_75"
[9] "CNS.U251" "LC.EKVX" "LC.HOP_62" "LC.HOP_92"
[13] "LC.NCI_H226" "ME.M14" "ME.MALME_3M" "ME.SK_MEL_28"
[17] "ME.UACC_62" "OV.OVCAR_4" "OV.OVCAR_5" "OV.OVCAR_8"
[21] "OV.SK_OV_3" "PR.DU_145" "RE.786_0" "RE.A498"
[25] "RE.ACHN" "RE.CAKI_1" "RE.RXF_393" "RE.SN12C"
[29] "RE.TK_10" "RE.UO_31"
[[1]]$Neg
[1] "BR.MCF7" "CO.COLO205" "CO.HCC_2998" "CO.HCT_116" "CO.HCT_15"
[6] "CO.HT29" "CO.KM12" "CO.SW_620" "LC.NCI_H460" "LC.NCI_H522"
[11] "LE.CCRF_CEM" "LE.HL_60" "LE.K_562" "LE.MOLT_4" "LE.RPMI_8226"
[16] "LE.SR"
[[2]]
[[2]]$Pos
[1] "BR.BT_549" "BR.HS578T" "BR.MDA_MB_231" "CNS.SF_268"
[5] "CNS.SF_295" "CNS.SF_539" "CNS.SNB_19" "CNS.SNB_75"
[9] "CNS.U251" "LC.EKVX" "LC.HOP_62" "LC.HOP_92"
[13] "LC.NCI_H226" "ME.M14" "ME.MALME_3M" "ME.SK_MEL_28"
[17] "ME.UACC_62" "OV.OVCAR_4" "OV.OVCAR_5" "OV.OVCAR_8"
[21] "OV.SK_OV_3" "PR.DU_145" "RE.786_0" "RE.A498"
[25] "RE.ACHN" "RE.CAKI_1" "RE.RXF_393" "RE.SN12C"
[29] "RE.TK_10" "RE.UO_31"
[[2]]$Neg
[1] "BR.MCF7" "CO.COLO205" "CO.HCC_2998" "CO.HCT_116" "CO.HCT_15"
[6] "CO.HT29" "CO.KM12" "CO.SW_620" "LC.NCI_H460" "LC.NCI_H522"
[11] "LE.CCRF_CEM" "LE.HL_60" "LE.K_562" "LE.MOLT_4" "LE.RPMI_8226"
[16] "LE.SR"
Stability-boot:
1 - sum(SumNum)/sum(SumDenom)
1 0.7479136
Representation Quality boot:
LI LS
BR.MCF7 48.73514 65.34575
BR.MDA_MB_231 63.86100 76.98456
BR.HS578T 43.83889 58.26709
BR.BT_549 31.33843 57.43694
BR.T47D 15.85464 32.07248
CNS.SF_268 53.97690 75.31698
Inertia-Boot:
Inertia-Mean Inertia-Sd LI LS
Dim 1 15.693408 0.21141044 15.276515 16.110300
Dim 2 11.596881 0.16482380 11.271855 11.921906
Dim 3 2.682080 0.06487273 2.554154 2.810006
Dim 4 2.559890 0.05633208 2.448806 2.670974
Dim 5 2.469440 0.05269889 2.365520 2.573360
Dim 6 2.387897 0.04156387 2.305935 2.469859
>
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> dev.off()
null device
1
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and