Plot a TrajPlot of a DiStatis object

Description

Plot a TrajPlot of a DiStatis object

Usage

## S4 method for signature 'DiStatis'
TrajPlot(x,xlabT="Dim 1", ylabT="Dim 2",
mainTraj=NULL,legend=TRUE ,xlimi=NULL,ylimi=NULL,panel=TRUE,
colours=NULL,...)

Arguments

Value

plotted Trajectories Plot of the given DiStatis object.

Author(s)

M L Zingaretti, J A Demey-Zambrano, J L Vicente Villardon, J R Demey

Examples

{
Z2<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
Colores2<-c(rep(colors()[657],5),rep(colors()[637],6),
rep(colors()[537],7),rep(colors()[552],6),rep(colors()[57],10)
,rep(colors()[300],8),rep(colors()[461],7),rep(colors()[450],2)
,rep(colors()[432],7))
Colores1<-c(rep("Breast",5),rep("CNS",6),rep("Colon",7)
,rep("Leukemia",6),rep("Melanoma",10),rep("Lung",8),rep("Ovarian",7)
,rep("Prostate",2),rep("Renal",7))
TrajPlot(Z2,xlabT = "",ylabT="",colours=Colores2,legend=FALSE)
legend("topleft",unique(Colores1),col=unique(Colores2),bty="n",pch=16,cex=1)

}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(kimod)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/kimod/DiStatis-TrajPlot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: TrajPlot
> ### Title: Plot a 'TrajPlot' of a DiStatis object
> ### Aliases: TrajPlot TrajPlot,DiStatis-method
> 
> ### ** Examples
> 
> {
+ Z2<-DiStatis(NCI60Selec,Scale=TRUE,Center=TRUE)
+ Colores2<-c(rep(colors()[657],5),rep(colors()[637],6),
+ rep(colors()[537],7),rep(colors()[552],6),rep(colors()[57],10)
+ ,rep(colors()[300],8),rep(colors()[461],7),rep(colors()[450],2)
+ ,rep(colors()[432],7))
+ Colores1<-c(rep("Breast",5),rep("CNS",6),rep("Colon",7)
+ ,rep("Leukemia",6),rep("Melanoma",10),rep("Lung",8),rep("Ovarian",7)
+ ,rep("Prostate",2),rep("Renal",7))
+ TrajPlot(Z2,xlabT = "",ylabT="",colours=Colores2,legend=FALSE)
+ legend("topleft",unique(Colores1),col=unique(Colores2),bty="n",pch=16,cex=1)
+ 
+ }
The calculations were performed using the scalar product between the tables
The Projection of all variables will be made when the number of variables is less than 50
figure margins too large, It will be held one plot
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>