R Graphical Manual

Last data update: 2014.03.03

R: Plot the LD LASSO solution by physical position.

plot_beta

R Documentation

Plot the LD LASSO solution by physical position.

Creates a plot of LD LASSO estimates using the physical map, bpmap

plot_beta( beta, bpmap=NA, block.bounds.vec=NA )

`beta`	A vector of ldlasso estimates.
`bpmap`	A vector of map positions in terms of kb from the left boundary
`block.bounds.vec`	A vector of block boundaries positions in kilobases from the left boundary. Boundaries are plotted at the midpoint of SNP intervals.

Includes haplotpye block boundaries as vertical broken lines.

A plot object.

Samuel G. Younkin