Plot SRV clusters

Description

Plot arrows defined by SRV on data

Usage

SRV.plot(file1,file2,lo,hi,k,title)

Arguments

Author(s)

Lyamine Hedjazi

See Also

simple.plot

Examples

# Load data files

load_datafiles()

# Format data

format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)

## Plot SRV profile

SRV.plot(file1=cleandat,file2=rectangle_SRV,lo=3.02,hi=3.08,k=1:168,title="Cluster plot")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mQTL.NMR)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mQTL.NMR/SRV.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: SRV.plot
> ### Title: Plot SRV clusters
> ### Aliases: SRV.plot
> ### Keywords: function
> 
> ### ** Examples
> 
> 
> # Load data files
> 
> load_datafiles()
> 
> # Format data
> 
> format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)
[1] "Start formatting the datafile /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/phenofile.txt and the genotype file /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/genofile.txt into the csvs files: met.clean.txt gen.clean.txt"
> 
> ## Plot SRV profile
> 
> SRV.plot(file1=cleandat,file2=rectangle_SRV,lo=3.02,hi=3.08,k=1:168,title="Cluster plot")
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>