Last data update: 2014.03.03

R: Plot top lod SRV clusters
SRV_lod.plotR Documentation

Plot top lod SRV clusters

Description

Plot all SRV clusters associated with the top lod locus

Usage

SRV_lod.plot(results, file, Th)

Arguments

results

a list specifying the results of mQTL mapping

file

a text file contains resulting clusters

Th

a numerical value of LOD threshold

Author(s)

Lyamine Hedjazi

See Also

SRV.plot

Examples


load_datafiles()
load(results)

## Plot LOD profile
SRV_lod.plot(results,rectangle_SRV,T=1)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mQTL.NMR)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mQTL.NMR/SRV_lod.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: SRV_lod.plot
> ### Title: Plot top lod SRV clusters
> ### Aliases: SRV_lod.plot
> ### Keywords: function
> 
> ### ** Examples
> 
> 
> load_datafiles()
> load(results)
> 
> ## Plot LOD profile
> SRV_lod.plot(results,rectangle_SRV,T=1)
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>