a character specifying the summarizing statistical measure of peaks
intMeth
a charcter specifying summarizing method across samples ("mean" or "max")
clustidx
index specifying the SRV cluser of interest (optinal)
Author(s)
Lyamine Hedjazi
See Also
SRV.plot
Examples
load_datafiles()
load(results)
# Format data
format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)
## Plot SRV profile
Top_SRV.plot(file1=cleandat,file2=rectangle_SRV,results=results,met=met,intMeth="mean")
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(mQTL.NMR)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mQTL.NMR/Top_SRV.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Top_SRV.plot
> ### Title: Plot top SRV clusters
> ### Aliases: Top_SRV.plot
> ### Keywords: function
>
> ### ** Examples
>
>
> load_datafiles()
>
> load(results)
>
> # Format data
>
> format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)
[1] "Start formatting the datafile /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/phenofile.txt and the genotype file /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/genofile.txt into the csvs files: met.clean.txt gen.clean.txt"
>
> ## Plot SRV profile
> Top_SRV.plot(file1=cleandat,file2=rectangle_SRV,results=results,met=met,intMeth="mean")
>
>
>
>
>
>
> dev.off()
null device
1
>