Plot NMR profile plus SRV regions

Description

Plot NMR profile plus SRV regions and consensus across the various statistics

Usage

simple.plot(file,lo,hi,k,title)

Arguments

Value

NMR profile and SRV region plot with peak calling consensus

Author(s)

Jean-Baptiste Cazier

See Also

SRV.plot

Examples

# Load data files

load_datafiles()

# Format data

format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)

# Plot NMR profile
 simple.plot(file=cleandat,lo=3.02,hi=3.08,k=1:20,title="NMR profile") 

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(mQTL.NMR)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/mQTL.NMR/simple.plot.Rd_%03d_medium.png", width=480, height=480)
> ### Name: simple.plot
> ### Title: Plot NMR profile plus SRV regions
> ### Aliases: simple.plot
> ### Keywords: function
> 
> ### ** Examples
> 
> 
> # Load data files
> 
> load_datafiles()
> 
> # Format data
> 
> format_mQTL(phenofile,genofile,physiodat,cleandat,cleangen)
[1] "Start formatting the datafile /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/phenofile.txt and the genotype file /home/ddbj/local/lib64/R/library/mQTL.NMR/extdata/genofile.txt into the csvs files: met.clean.txt gen.clean.txt"
> 
> # Plot NMR profile
>  simple.plot(file=cleandat,lo=3.02,hi=3.08,k=1:20,title="NMR profile") 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>