Replace graphical default parameters by user supplied parameters

Description

This function may be used to compare default graphical parameters for microarray diagnostic plots to user supplied parameters given in .... User supplied parameters overwrite the defaults. It is used in maBoxplot, maPlot, and maImage.

Usage

maDotsDefaults(dots, defaults)

Arguments

Value

Author(s)

Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.

References

S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.

See Also

maDefaultPar, maBoxplot, maPlot, maImage.

Examples

dots<-list(xlab="X1", ylab="Y1")
defaults<-list(xlab="X1", ylab="Y2", col=2)
pars<-maDotsDefaults(dots, defaults)

do.call("plot",c(list(x=1:10), pars))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(marray)
Loading required package: limma
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/marray/maDotsDefaults.Rd_%03d_medium.png", width=480, height=480)
> ### Name: maDotsDefaults
> ### Title: Replace graphical default parameters by user supplied parameters
> ### Aliases: maDotsDefaults
> ### Keywords: misc
> 
> ### ** Examples
> 
> dots<-list(xlab="X1", ylab="Y1")
> defaults<-list(xlab="X1", ylab="Y2", col=2)
> pars<-maDotsDefaults(dots, defaults)
> 
> do.call("plot",c(list(x=1:10), pars))
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>