Last data update: 2014.03.03

R: Classifies metacommunities
IdentifyStructureR Documentation

Classifies metacommunities

Description

Identifies structure (or quasi-structure) and outputs a classification.

Usage

IdentifyStructure(metacom.obj)

Arguments

metacom.obj

The result of the 'Metacommunity' function, containing a list of 4 elements; the empirical matrix being tested, and results for coherence, turnover, and boundary clumping.

Value

Ouputs a classification of the metacommunity.

Note

Quasi structures, as well as 'random' and 'Gleasonian' structures, may not strictly be discernable through the EMS approach, as they rely on inferring a result from a non-significant test ('accepting the null'), which is typically a bad idea.

Author(s)

John Lefcheck and Tad Dallas

Examples


# Define an interaction matrix
data(TestMatrices)
pres3c=TestMatrices[[6]]

# Analyze metacommunity
pres3c.metacom=Metacommunity(pres3c, sims=10, method='r1')

# Identify the structure
IdentifyStructure(pres3c.metacom)


Results