Last data update: 2014.03.03

 R: smoothing-splines anova fits for each permutation
ssPermAnalysisR Documentation

smoothing-splines anova fits for each permutation

Description

Calculates the fit for each permutation and estimates the area under the null (permutted) model for interesting time intervals of differential abundance.

Usage

ssPermAnalysis(data, formula, permList, intTimes, timePoints,
  include = c("class", "time:class"), ...)

Arguments

data

Data used in estimation.

formula

Formula for ssanova.

permList

A list of permutted class memberships

intTimes

Interesting time intervals.

timePoints

Time points to interpolate over.

include

Parameters to include in prediction.

...

Options for ssanova

Value

A matrix of permutted area estimates for time intervals of interest.

See Also

cumNorm fitTimeSeries ssFit ssPerm ssIntervalCandidate

Examples


# Not run

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO