This function converts metabolite set (list to XML format).
Usage
list2xml(filepath, M)
Arguments
filepath
file path of metabolite set (original file)
M
list of metabolite set and metabolite IDs
Details
The "filepath" is only used for writing a original path in XML.
Value
XML format of metabolite set
Author(s)
Hiroyuki Yamamoto
Examples
# ---------------------------------
# Convert KEGG's tar.gz to list
# ---------------------------------
# filepath <- "C:/hsa.tar.gz" # location of original files of metabolite set
# Z <- pathway_class(filepath) # making metabolite set list
# L <- list2xml(filepath, Z) # xml format
# ----------------------
# Convert csv to list
# ----------------------
# filepath <- "C:/pathway.csv" # csv file
# Z <- csv2list(filepath) # csv file to list
# L <- list2xml(filepath, Z) # xml format
# ----------------------
# Convert list to xml
# ----------------------
# savefile <- "kegg_test.xml" # set filename (XML)
# fullpath <- paste(dirname(filepath),savefile,sep="/") # fullpath of saved XML file
# saveXML(L,fullpath) # save XML