The mtkAnalyser class

Description

The mtkAnalyser class is a sub-class of the class mtkProcess used to manage the sensitivity analysis process. It provides all the slots and methods defined in the class mtkProcess.

Class Hierarchy

Parent classes :

mtkProcess

Direct Known Subclasses :

mtkNativeAnalyser,mtkMorrisAnalyser, etc.

Constructor

mtkAnalyser

signature(protocol="R", site="mtk", service="", parameters=NULL, parametersList=NULL, ready=TRUE, state=FALSE, result=NULL)

Slots

name:

(character) a string to name the processing type. Here, it always takes "analyze".

protocol:

(character) a string to name the protocol used to run the process: http, system, R, etc.

site:

(character) a string to indicate where the service is located.

service:

(character) a string to name the method or the service (if remotely) to invoke.

parameters:

(vector) a vector of mtkParameter containing the parameters to pass while calling the service.

ready:

(logical) a logical to tell if the process is ready to run.

state:

(logical) a logical to tell if the results produced by the process are available and ready to be consumed.

result:

(ANY) NULL or an object of the class mtkAnalyserResult to hold the results produced by the process

Methods

setName

signature(this = "mtkAnalyser", name = "character"): Not used, just inherited from the parent class.

setParameters

signature(this = "mtkAnalyser", f = "vector"): Assigns a new vector of parameters to the process.

getParameters

signature(this = "mtkAnalyser"): Returns the parameters as a named list.

is.ready

signature( = "mtkAnalyser"): Tests if the process is ready to run.

setReady

signature(this = "mtkAnalyser", switch = "logical"): Makes the process ready to run.

is.ready

signature( = "mtkAnalyser"): Tests if the results produced by the process are available.

setReady

signature(this = "mtkAnalyser", switch = "logical"): Marks the process as already executed.

getResult

signature(this = "mtkAnalyser"): Returns the results produced by the process as a mtkAnalyserResult.

getData

signature(this = "mtkAnalyser"): Returns the results produced by the process as a data.frame.

serializeOn

signature(this = "mtkAnalyser"): Returns all data managed by the process as a named list.

run

signature(this = "mtkAnalyser", context= "mtkExpWorkflow"): Runs the sensitivity analysis on the model defined in the context.

summary

signature(object = "mtkAnalyser"): Provides a summary of the results produced by the process.

print

signature(x = "mtkAnalyser"): Prints a report of the results produced by the process.

plot

signature(x = "mtkAnalyser"): Builds a plot of the results produced by the process.

report

signature(this = "mtkAnalyser"): Reports the results produced by the process.

Author(s)

Juhui WANG, MIA-Jouy, Inra, Juhui.Wang@jouy.inra.fr

References

J. Wang, H. Richard, R. Faivre, H. Monod (2013). Le package mtk, une biblioth<c3><83><c2><a8>que R pour l'exploration num<c3><83><c2><a9>rique des mod<c3><83><c2><a8>les. In: Analyse de sensibilit<c3><83><c2><a9> et exploration de mod<c3><83><c2><a8>les : Application aux sciences de la nature et de l'environnement (R. Faivre, B. Iooss, S. Mah<c3><83><c2><a9>vas, D. Makowski, H. Monod, Eds). Editions Quae, Versailles.

Examples

# Creates an analyser avec the method "Morris" 
# implemented in the package "mtk".
	
	analyser <- mtkAnalyser(service="Morris",
		 parametersList=list(nboot=20))

Results