parser for mzXML, mzData, mzML and mzid files (mass spectrometry data)

Description

The mzR package is a library purely for accessing mass spectrometry data in a wide range of formats. Several backend libraries are used, such as the ISB random acces parser (RAMP) and ProteoWizard (pwiz) for mass spectrometry mzXML, mzData, mzML and mzid files. The package contains the original RAMP code written by the ISB, and a subset of the proteowizard library for mzML and mzid.

Details

Further information is available in the following vignette:

Author(s)

Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou

Maintainers: Bernd Fischer <bernd.fischer@embl.de>, Steffen Neumann <sneumann@ipb-halle.de>, Laurent Gatto <lg390@cam.ac.uk>, Qiang Kou <qkou@umail.iu.edu>

References

Nat Biotechnol. 2012 Oct 10;30(10):918-20. doi: 10.1038/nbt.2377. A cross-platform toolkit for mass spectrometry and proteomics. Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, Maccoss M, Tabb DL, Mallick P. http://www.ncbi.nlm.nih.gov/pubmed/23051804

Results