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Last data update: 2014.03.03

R: Display two neurons with segments coloured by similarity

show_similarity

R Documentation

Display two neurons with segments coloured by similarity

Description

Display two neurons with segments coloured by similarity

Usage

show_similarity(n1, n2, smat = get(getOption("nat.nblast.defaultsmat")),
  cols = colorRampPalette(c("#0000FF", "#FF0000")), col = "black",
  AbsoluteScale = FALSE, PlotVectors = TRUE, ...)

Arguments

`n1`	a neuron to compare and colour.
`n2`	the neuron to compare against.
`smat`	a score matrix.
`cols`	the function to use to colour the segments (e.g. `heat.colors`).
`col`	the colour with which to draw the comparison neuron.
`AbsoluteScale`	logical indicating whether the colours should be calculated based on the minimum and maximum similarities for the neuron (`AbsoluteScale = FALSE`) or on the minimum and maximum possible for all neurons.
`PlotVectors`	logical indicating whether the vectors of the `dotprops` representation should be plotted. If `FALSE`, only the points are plotted.
`...`	extra arguments to pass to `plot3d`.

Value

show_similarity is called for the side effect of drawing the plot; a vector of object IDs is returned.

Display two neurons with segments coloured by similarity

Description

Usage

Arguments

Value

Results