An object of class mcia, the result returned by mcia.
var
see plotVar
axes
see plotVar
var.col
see plotVar
var.lab
see plotVar
bg.var.col
see plotVar
nlab
see plotVar
sepID.data
see plotVar
sepID.sep
see plotVar
df
Integers indicating which dataset should be plotted, the default
NA means all datasets are plotted.
layout
The layout of multiple plots.
...
Other arguments
Value
If var is not NA, a data frame is return, with rows for variables of
interest and columns of logical values indicating which data.frames contains which
variables.
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
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> library(omicade4)
Loading required package: ade4
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/omicade4/plotVar.mcia.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plotVar.mcia
> ### Title: Plot variable space of result from 'mcia'
> ### Aliases: plotVar.mcia
>
> ### ** Examples
>
> data(NCI60_4arrays)
> mcoin <- mcia(NCI60_4arrays)
> plot.mcia(mcoin, sample.lab=FALSE, df.col=4:7)
> plotVar(mcoin, var=NA, bg.var.col=1:4, var.lab=TRUE)
> plotVar(mcoin, var=c("SPOPL", "CAPN2", "SNX8"),
+ df=1:4, var.lab=TRUE, var.col=c("red", "green", "blue"))
Variables agilent hgu133 hgu133p2 hgu95
1 SPOPL FALSE FALSE FALSE FALSE
2 CAPN2 FALSE FALSE FALSE FALSE
3 SNX8 FALSE FALSE FALSE FALSE
>
>
>
>
>
> dev.off()
null device
1
>