Last data update: 2014.03.03
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R: Ornstein-Uhlenbeck methods for comparative phylogenetic...
ouch-package | R Documentation |
Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
Description
The ouch package provides facilities for Ornstein-Uhlenbeck based methods of phylogenetic comparative analysis.
Classes
The basic class, ouchtree , is provided to encode a phylogenetic tree.
Plot and print methods are provided.
The class browntree derives from class ouchtree and encodes the results of fitting a Brownian Motion model to data.
The class hansentree derives from class ouchtree and encodes the results of fitting a Hansen model to data.
Detailed Documentation
- ouchtree
ouchtree
- Brownian motion methods
-
brown ,
browntree-class
- Ornstein-Uhlenbeck methods
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hansen ,
hansentree-class
- simulate methods
-
simulate-browntree ,
simulate-hansentree
- plot methods
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plot-browntree ,
plot-hansentree
ape2ouch -
Convert a tree in ape format to ouch format.
See ape2ouch
Author(s)
Aaron A. King (kingaa at umich dot edu)
References
Butler, M.A. and A.A. King (2004)
Phylogenetic comparative analysis: a modeling approach for adaptive evolution.
American Naturalist 164:683–695.
Results
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