Last data update: 2014.03.03

 R: Draw 2 data sets on one PCA plot
plot2DsR Documentation

Draw 2 data sets on one PCA plot

Description

Takes 2 linkS4class{MSnSet} instances as input to plot the two data sets on the same PCA plot. The second data points are projected on the PC1 and PC2 dimensions calculated for the first data set.

Usage

plot2Ds(object, pcol, fcol = "markers", cex.x = 1, cex.y = 1,
  pch.x = 21, pch.y = 23, col, mirrorX = FALSE, mirrorY = FALSE,
  plot = TRUE, ...)

Arguments

object

An MSnSet or a MSnSetList. In the latter case, only the two first elements of the list will be used for plotting and the others will be silently ignored.

pcol

If object is an MSnSet, a factor or the name of a phenotype variable (phenoData slot) defining how to split the single MSnSet into two or more data sets. Ignored if object is a MSnSetList.

fcol

Feature meta-data label (fData column name) defining the groups to be differentiated using different colours. Default is markers. Use NULL to suppress any colouring.

cex.x

Character expansion for the first data set. Default is 1.

cex.y

Character expansion for the second data set. Default is 1.

pch.x

Plotting character for the first data set. Default is 21.

pch.y

Plotting character for the second data set. Default is 23.

col

A vector of colours to highlight the different classes defined by fcol. If missing (default), default colours are used (see getStockcol).

mirrorX

A logical indicating whether the x axis should be mirrored?

mirrorY

A logical indicating whether the y axis should be mirrored?

plot

If TRUE (default), a plot is produced.

...

Additinal parameters passed to plot and points.

Value

Used for its side effects of producing a plot. Invisibly returns an object of class plot2Ds, which is a list with the PCA analyses results (see prcomp) of the first data set and the new coordinates of the second data sets, as used to produce the plot and the respective point colours. Each of these elements can be accessed with data1, data2, col1 and code2 respectively.

Author(s)

Laurent Gatto

See Also

See plot2D to plot a single data set and move2Ds for a animation.

Examples

library("pRolocdata")
data(tan2009r1)
data(tan2009r2)
msnl <- MSnSetList(list(tan2009r1, tan2009r2))
plot2Ds(msnl)
## tweaking the parameters
plot2Ds(list(tan2009r1, tan2009r2),
        fcol = NULL, cex.x = 1.5)
## input is 1 MSnSet containing 2 data sets
data(dunkley2006)
plot2Ds(dunkley2006, pcol = "replicate")
## no plot, just the data
res <- plot2Ds(dunkley2006, pcol = "replicate",
               plot = FALSE)
res
head(data1(res))
head(col1(res))

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(pRoloc)
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics

This is MSnbase version 1.20.7 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:stats':

    smooth

The following object is masked from 'package:base':

    trimws

Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: XML
Loading required package: cluster

This is pRoloc version 1.12.4 
  Read '?pRoloc' and references therein for information
  about the package and how to get started.

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pRoloc/plot2Ds.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot2Ds
> ### Title: Draw 2 data sets on one PCA plot
> ### Aliases: col1 col2 data1 data2 plot2Ds
> 
> ### ** Examples
> 
> library("pRolocdata")

This is pRolocdata version 1.10.0.
Use 'pRolocdata()' to list available data sets.
> data(tan2009r1)
> data(tan2009r2)
> msnl <- MSnSetList(list(tan2009r1, tan2009r2))
> plot2Ds(msnl)
> ## tweaking the parameters
> plot2Ds(list(tan2009r1, tan2009r2),
+         fcol = NULL, cex.x = 1.5)
> ## input is 1 MSnSet containing 2 data sets
> data(dunkley2006)
> plot2Ds(dunkley2006, pcol = "replicate")
> ## no plot, just the data
> res <- plot2Ds(dunkley2006, pcol = "replicate",
+                plot = FALSE)
> res
$pca
Standard deviations:
[1] 2.262922407 1.371773556 0.746055402 0.487710756 0.355766910 0.276373741
[7] 0.002122164 0.001415174

Rotation:
              PC1        PC2        PC3        PC4        PC5        PC6
M1F1A  -0.3962096 -0.2485627 -0.2797386  0.2859203  0.1062071 -0.4494687
M1F4A  -0.3040624  0.4250988  0.4962665  0.3052282 -0.3844434  0.3348049
M1F7A   0.3504491  0.3425841 -0.3419524 -0.4256061 -0.5524150 -0.2123026
M1F11A  0.4114593 -0.1807571  0.1945606 -0.2517424  0.4273908  0.4013499
M2F1A  -0.3831189 -0.2855956 -0.3170905 -0.2579206 -0.2095711  0.4791081
M2F4A  -0.2929859  0.4953337  0.2077168 -0.4245483  0.4393174 -0.3114312
M2F7A   0.2890872  0.4455778 -0.4616572  0.5370165  0.2590656  0.1888524
M2F11A  0.3771715 -0.2863752  0.4047969  0.2131187 -0.2215026 -0.3428269
               PC7        PC8
M1F1A   0.63833506 0.02137118
M1F4A   0.35686742 0.01212579
M1F7A   0.33375608 0.01103564
M1F11A  0.59384097 0.02020646
M2F1A  -0.01947284 0.57510162
M2F4A  -0.01335776 0.39401602
M2F7A  -0.01131747 0.33684803
M2F11A -0.02116750 0.63198818

$pred
                   PC1          PC2           PC3           PC4          PC5
AT1G09210 -3.675564827 -1.591375486 -0.9372003753 -0.6718798418  0.833207256
AT1G21750 -3.569333293 -2.017986181 -1.0695684278 -0.6688106135  0.456449500
AT1G51760 -3.441717861 -1.929071268 -1.1509684192 -0.1687074302  0.084216991
AT1G56340 -3.947838755 -1.998443740 -1.0134595875 -0.5338110039  0.599502225
AT2G32920 -4.114377491 -2.601146991 -1.5603087210 -0.0982890850  0.590814608
AT2G47470 -3.749502086 -1.825131166 -1.0342235210 -0.0003809747  0.661442065
AT3G54960 -4.489127762 -2.148864509 -0.9423425671 -1.0073605583  0.619262045
AT4G24190 -4.258781968 -2.256006416 -1.0736547340 -0.1639671598  0.659236701
AT5G60640 -4.217001447 -2.426661414 -1.2950788220 -0.1842999650  0.659906132
AT1G07810 -2.040102879 -0.730555703 -0.5485869785  0.0857529924  0.436199165
AT1G32210 -1.776455700 -0.428947559 -0.2978503410  0.1781018942 -0.153092266
AT1G34130 -2.970115600 -0.781584175 -0.5831495769 -0.2468932755  0.635296320
AT1G54990 -2.843982779 -0.604818969 -0.4167085357 -0.0899534299  0.282916018
AT1G61790 -2.449507676 -0.515866070 -0.6462261726 -0.4573943930  0.867315996
AT1G67490 -1.936106770 -0.532219227 -0.4227913397  0.1100357157  0.652773344
AT1G67730 -1.937162892 -0.360891925 -0.3950341127  0.3155537968  0.340531674
AT1G76400 -2.652661046 -0.385331503 -0.6528702470  0.1262422680  0.528844667
AT2G01470 -2.938563281 -0.949485697 -0.6717782641  0.2370403115  0.558905093
AT2G01720 -2.519490434 -0.708146776 -0.5274720328  0.0135713259  0.742024761
AT2G03120 -2.710372517 -0.749891155 -0.5182412868  0.3474867787  0.493396482
AT2G16530 -2.564459876 -0.775168874 -0.7122673177 -0.9802863490  0.463406401
AT2G21160 -2.260209345 -0.318760743 -0.6354261014  0.1105258234  0.758689407
AT2G38960 -2.841361018 -1.036491864 -1.1296642513  0.1953923245  0.356321304
AT2G39960 -2.414856814 -0.811027899 -0.8975365837  0.2758048410  0.706459234
AT2G45140 -2.399309842 -0.601818950 -0.3836265258 -0.3422021641  0.205345279
AT2G46170 -2.197029982 -1.444165544 -0.8360849622 -0.0570792547  0.769817310
AT3G05230 -2.679072340 -0.364747867 -0.4501701641  0.2076801515  0.461251670
AT3G07140 -2.338153636 -0.406662228 -0.2536986410  0.0913139147  0.520379370
AT3G07180 -3.015809425 -0.692252759 -0.4418481232  0.1192021798  0.255910198
AT3G52190 -2.264737999 -0.506307772 -0.3943184716  0.2526217062  0.153224527
AT3G55360 -2.542916293 -0.559114662 -0.4351146776  0.0000196616  0.566026136
AT3G57220 -2.921240936 -0.754431109 -0.4153888532 -0.6978532312  0.807379772
AT3G57650 -2.958169625 -0.516086925 -0.5272350284 -0.2120920995  0.273625116
AT4G01320 -2.850381577 -0.874808605 -0.4822379500 -0.1358489068  0.471400870
AT4G09580 -2.064677521 -0.306539464 -0.2019995576 -0.2114060053  0.010813026
AT4G21150 -2.807011303 -0.456340018 -0.4668505712 -0.0208718778  0.459117187
AT4G32130 -2.793237309 -0.632480511 -0.4179525475 -0.1208838902  0.164668529
AT4G36480 -2.877967921 -0.996794927 -0.4696108245 -0.2337458325  0.445459705
AT4G37640 -2.455425002 -0.901494008 -0.4088993290 -0.0360419788  0.139526333
AT5G07340 -2.823368489 -0.637187931 -0.5560874364  0.3556010173  0.611422817
AT5G19690 -2.233467049 -0.594332215 -0.7340778080  0.2843714867  0.652592600
AT5G45160 -3.216707087 -1.335267564 -0.8099444026 -0.0457957508  0.167240382
AT5G48810 -2.172976821 -0.350474159 -0.5537206471 -0.1766981284  0.527148250
AT5G53560 -3.233599183 -1.023815352 -0.8606045847  0.0890333433  0.530747341
AT5G55940 -2.722918039 -0.410113078 -0.6182977394 -0.1841412985  0.867226532
AT5G61790 -2.859885100 -0.906224853 -0.5785156443 -0.0355166833  0.450125826
AT5G62390 -1.741651863 -0.267811044 -0.2930855098  0.2292225091  0.027203552
AT5G66680 -2.684691335 -0.479777825 -0.5077424400 -0.3479196728  0.675121732
AT1G02120 -3.403593297 -0.841328606 -0.5742400859  0.1597541054  0.068631737
AT1G08470 -2.201584108 -0.780282069 -0.7976458236  0.0398830294  0.522027377
AT1G11680 -3.077217826 -1.107015699 -0.7265420018  0.0326267865  0.253654965
AT1G14010 -2.898532527 -1.158526111 -0.9334585639  0.4670193318  0.139552844
AT1G18260 -2.937642738 -0.639818597 -0.6638617128  0.1653558868  0.383507262
AT1G18540 -2.871427990 -0.312558627 -0.3150961069 -0.7046802273  0.280923680
AT1G18700 -2.481485649 -0.727999395 -0.7375613330  0.0784999772  0.348557206
AT1G19370 -2.727361709 -1.190107768 -0.8361814603  0.4673857352  0.594147521
AT1G20330 -2.537959531 -0.506463650 -0.4598469608 -0.0197327604  0.383165974
AT1G22200 -2.773048261 -1.032075283 -0.9055604928 -0.3345720432  0.481516058
AT1G27770 -2.384575694 -0.482919527 -0.3077582070  0.1202191573  0.455842679
AT1G35620 -2.822242231 -1.064050804 -0.5329637747  0.3826852842  0.339701197
AT1G51570 -2.177224055 -0.838783568 -0.7002957875  0.4043321272  0.338792927
AT1G52260 -3.533889703 -1.029664074 -0.3977573190 -0.4630514117  0.879980172
AT1G52600 -2.510970665 -0.435384410 -0.7668336548  0.1342126497  0.570960244
AT1G55850 -2.862875808 -0.853384873 -0.8330345060 -0.0259107207  0.402123735
AT1G61770 -2.533236270 -0.572479891 -0.2989016869 -0.1177400279  0.616743451
AT1G63050 -1.790953440 -0.519168216  0.1675397056  0.7344515054 -0.096218308
AT1G64090 -3.348839836 -0.866008175 -0.5085578375  0.4415540130  0.238349511
AT1G64950 -2.042639647 -0.555782016 -0.3656029434  0.1034051422  0.324332699
AT1G65020 -2.129074237 -0.147389833 -0.3212590183  0.0566584380  0.515722893
AT1G65270 -2.730076891 -1.101719178 -1.1415522506  0.4622097668  0.191751810
AT1G65820 -2.890479431 -0.859602885 -0.3479732691 -0.0863275915  0.463786013
AT1G70770 -2.303129231 -0.396270447 -0.5256039772 -0.4352114247  0.659907767
AT1G71780 -3.172098769 -0.840074994 -0.8216044252  0.1714623768  0.261427541
AT1G75140 -2.646622248 -0.821075647 -0.6955186460 -0.1238370109  0.286314043
AT1G79940 -2.264933842 -0.596104742 -0.5504665307  0.3438640161  0.423541245
AT2G01250 -1.797553823 -0.402329069  0.3022125586  0.4212559578 -0.157079845
AT2G03510 -3.046160203 -0.799299573 -0.6557183465  0.2666277552  0.315668298
AT2G04350 -2.480823466 -0.891534243 -0.6832934960  0.3405245791  0.606036803
AT2G16760 -2.219470833 -0.431950263 -0.5451964947  0.2997132177  0.140575267
AT2G20990 -2.037247656 -1.049009786 -0.5190165107  0.2623938879  0.522246747
AT2G21600 -2.982005543 -1.148005813 -1.4463534295  0.3760197912  0.509184698
AT2G24180 -2.311750239 -0.700007614 -0.8429677200  0.0765588629  0.703235443
AT2G24420 -3.131004112 -0.938950703 -0.6139077961  0.2185262119  0.388934064
AT2G25110 -2.549486712 -0.252343074 -0.4177474814  0.4893766966  0.137903423
AT2G33630 -2.460596190 -0.563686261 -0.6086983790 -0.6103400240  0.655373106
AT2G45510 -2.534591711 -0.599126434 -0.5257851008 -0.0437466346  0.403866128
AT3G01380 -2.634650351 -0.957544203 -0.6684656437 -0.0872804807  0.522951740
AT3G03330 -2.847464417 -0.817494521 -0.5952358605  0.5177571115  0.525793873
AT3G13410 -2.499677214 -1.299288586 -0.8259640437 -0.4206244564  0.662143314
AT3G13870 -3.015527739 -1.305651703 -0.9209726196  0.1861761697  0.648115093
AT3G14610 -2.641312256 -1.047074797 -1.0887395516 -0.1519442580  0.343311805
AT3G15710 -2.173295890 -0.427345879 -0.3552476984 -0.1169164655  0.525385810
AT3G18370 -2.360847216 -1.298389820 -0.5036363677  0.2058231619  0.288230386
AT3G23190 -2.360052129 -0.626708960 -0.6973796021  0.3099760434  0.355216338
AT3G26830 -3.006841579 -0.543443731 -0.5320580504 -0.6086626404  0.053802915
AT3G28580 -2.900304127 -0.916355005 -0.5303551197  0.0179910946  0.258750847
AT3G28720 -1.785730143 -1.001850904 -1.0310773681  0.4268603059  0.208619192
AT3G44330 -2.327134039 -0.362312308 -0.5181370508 -0.1941802408  0.586454072
AT3G48890 -2.518389888 -0.395451357 -0.8368000397  0.1475682333  0.296854963
AT3G51430 -2.762257973 -1.450647200 -1.0258636544 -0.1766550294  0.610126017
AT3G51440 -2.222287002 -0.688164643 -0.9736170434  0.4824801840  0.872279655
AT3G51460 -2.107373577 -0.836462408 -0.4274699036 -0.2363933554  0.325445029
AT3G57010 -2.191988368 -0.793146773 -0.7936978068 -0.0117876234  0.294863177
AT3G57030 -2.251635907 -0.891681120 -0.6697976171 -0.5181724577  0.830439467
AT3G57880 -2.714398443 -0.884073419 -0.7272142465 -0.0949862709  0.455962455
AT3G59500 -2.285269099 -0.965740428 -1.7660793926  0.4851892208  0.754410723
AT3G60600 -2.558797573 -1.125282851 -1.2056018701  0.3583331928  0.626257146
AT3G62360 -2.623653298 -0.430384202 -0.6478113631 -0.2055933218  0.715632691
AT3G66658 -3.141543575 -0.988939841 -0.6415616690  0.0111834404  0.451248426
AT4G00175 -2.377153659 -0.670203412 -0.4432978979 -0.0059534139  0.062223193
AT4G11800 -2.657828367 -0.974222158 -1.0599189777  0.1946099165  0.719133069
AT4G14420 -3.377518580 -1.261227512 -1.1829006269  0.2450685745  0.637342884
AT4G14950 -2.334639079 -0.383342298 -0.5507385142  0.1970747942  0.152690434
AT4G15760 -2.675039819 -1.134669291 -0.5968144745  0.4450533431  0.167129760
AT4G16170 -2.238696148 -1.183189266 -1.0133887866  0.2751294209  0.564776159
AT4G21180 -1.927251908 -0.780179486 -0.5783900958  0.1748498858  0.613030827
AT4G24330 -2.378659770 -0.685046235 -0.5257828766 -0.1975486045  0.648999792
AT4G27090 -2.279198447 -0.855345271 -0.1125251886  0.5231284181 -0.307133146
AT4G28570 -2.477948907 -0.205661626 -0.2232270311  0.5274436463  0.752332184
AT4G29520 -2.599884671 -0.276039962 -0.1605922466  0.4233395907 -0.081979776
AT4G30210 -2.259274926 -0.576189103 -0.8985044180  0.0681514214  0.521524579
AT4G30600 -3.013430368 -0.971683663 -0.7481123406  0.0670060471  0.428613952
AT4G31340 -2.241314525 -0.475487827 -0.7613987174 -0.2582691548  0.384552125
AT4G36220 -2.548541397 -0.851760369 -1.0242911676 -0.5727119159  0.150786647
AT4G36250 -1.716024376 -0.268800449 -0.4681798205  0.1478027805  0.614570611
AT4G37330 -2.358374968 -1.119722040 -1.0653785263 -0.1227804987  0.581806484
AT4G37370 -2.663875285 -0.392768576 -0.3781302140 -0.0271535395  0.460222802
AT4G37430 -1.748710055 -0.171297063 -0.6418268566  0.0330731219  0.445691855
AT5G03160 -2.799383971 -0.730009097 -0.6868993186 -0.5904596459  0.169580826
AT5G05670 -2.146650123 -0.532926750 -0.2238248755 -0.8177193320  0.275112937
AT5G11560 -2.695692306 -0.952617267 -0.8914635796 -0.1166231469  0.537165532
AT5G13640 -2.507900855 -0.744467058 -0.7164950556 -0.1561176918  0.409049094
AT5G17980 -2.908915942 -1.122736545 -0.7213198441  0.1060488077  0.283296870
AT5G19130 -2.601482161 -1.115131802 -0.7058172898  0.4489278345  0.329433233
AT5G20655 -2.154902031 -0.610687374 -0.7094572917  0.3599419016  0.503598384
AT5G23575 -2.625197520 -0.810258386 -0.5549801386 -0.0822315267  0.380363245
AT5G23630 -2.293686367 -0.577453623 -0.2626979441  0.2004859092  0.426191579
AT5G24810 -2.037642082 -0.552835913  0.0157271730 -0.0479909322  0.230163890
AT5G25900 -2.807472994 -1.122830416 -0.5935937636  0.0943361439  0.583827417
AT5G42020 -3.161120001 -1.002731985 -0.9482200079 -0.4398545259  0.784051359
AT5G42570 -3.229809653 -0.972333101 -0.5318855865  0.3494754047  0.599906898
AT5G44920 -2.815442462 -1.353173107 -0.9434927506  0.0220473742  0.730864730
AT5G45420 -2.373327080 -0.777261177 -0.3405428216 -1.2042593181  0.306550186
AT5G47420 -2.623722802 -1.219147515 -0.9516461205 -0.3060981425  0.725069750
AT5G49945 -2.700346328 -1.161449636 -0.9273865885 -0.4150045368  0.458213592
AT5G52240 -2.921089463 -0.838619011 -0.4766646010 -0.2635983194  0.739936904
AT5G52420 -3.498518786 -1.038492277 -0.5047857779  0.4971940084  0.555941262
AT5G58640 -2.724531562 -0.967979373 -0.7964241225 -0.0997053355  0.825953933
AT4G38215 -3.830025912 -1.899844996 -0.5117855986 -0.0048531712  0.528796548
AT5G57655 -3.547253756 -2.231202303 -1.1208464141 -0.2324142869  0.221395912
AT1G71220 -3.532307241 -1.649790431 -0.8831647349 -0.1247527838  0.455173500
AT1G77510 -3.345691767 -2.353425962 -1.3774742244  0.5998185948  0.443472983
AT2G30490 -3.227232133 -1.531168141 -0.9867639722  0.1698153489  0.522063728
AT2G39630 -1.492002910 -0.755014655 -0.4711016534  0.3893415275  0.112235074
AT3G16110 -3.679495034 -2.174917477 -1.6202244038  0.1178474908  0.318719628
AT3G24160 -2.831251627 -1.589480453 -1.3841152858  0.3160069083  0.406952381
AT3G51050 -1.697514947 -0.554313094 -1.5571923606  0.5277910572  0.449022272
AT4G33360 -2.008839831 -1.073315025 -0.9408221405 -0.2783324251  0.405220454
AT5G17770 -1.814814898 -0.801400885 -0.5277252736  0.2869285919  0.163126840
AT5G20520 -2.063599983 -0.974561942 -0.3177452309  0.3036193974  0.335499405
AT5G63840 -2.463750872 -1.285040262 -1.2990470990 -0.0357448288  0.274190800
AT1G44170 -2.556087757 -1.116734431 -0.9128156065  0.3769079123  0.434174346
AT3G27325 -1.838532052 -0.368935427 -0.8051471715  0.3091819059  0.651372009
AT1G08660  1.676225886  1.696618827 -0.8167454495 -1.0567522822 -0.607103751
AT1G19710  1.382874597  0.178190396 -1.5729631061 -0.0307360549 -0.128865602
AT1G21480  1.089366197  1.665476483 -0.5255217783  0.4755943596 -0.114996026
AT1G49710  2.049884419  1.571619533 -1.3447655837 -0.3312191042  0.365965487
AT1G51590  3.341014419  1.574157881 -2.0468145885 -0.1946406989 -0.342116603
AT1G74380  1.959593419  1.038618934 -1.6477298789 -0.3634086375 -0.088490920
AT1G78920 -0.051394249  0.427008192 -0.7446134923 -0.1125174342 -0.033488178
AT2G20370  1.461429479  1.914528440 -0.7558185981 -0.7221127533 -0.464888429
AT2G22900  0.351089331  2.078517697 -0.2715268867 -0.6925437332 -0.431248467
AT2G38650  2.505467379  2.178670845 -1.3780779235 -0.5646786691 -0.579376325
AT2G47650  2.271394200  1.678560589 -1.3183235250 -0.3825852359  0.213188613
AT3G02350  2.407019733  1.690037842 -1.7999657148 -0.4007588122 -0.324033167
AT3G03050  0.038001518  1.800238799  0.5603678301  0.0011140981 -0.267860852
AT3G07330  2.216208750  1.609461374 -1.0210694513  0.2676679700 -0.550286262
AT3G21160  2.971057656  0.977962220 -1.5341888999 -0.0676030361 -0.452997452
AT3G25140  2.918092123  1.661143705 -1.5579600420 -0.2419201718 -0.190650062
AT3G48820  1.727535369  1.562842282 -1.1622255878 -0.2783374018 -0.327289786
AT3G53520  2.130569223  1.811242006 -1.4140508687 -0.4152448613  0.051219640
AT3G55830  1.127684018  2.215811632 -1.1541485112  0.1074329845 -0.080513750
AT3G61130  1.265442895  1.428991724 -1.0268656786 -0.3236559275 -0.361006045
AT4G15240  0.926814462  1.338905325 -0.8055931517  0.4106403649  0.005130188
AT4G37690  0.377290603  2.268855780  0.0493943352 -0.7315718019 -0.454814133
AT4G38240  1.951470874  0.850259922 -1.6863486345 -0.7601854368 -0.452381507
AT4G38270  1.055079337  0.725655308 -0.9423997918  0.4067768147 -0.434924816
AT5G16910  0.627209249  1.580852008 -0.0867591117 -0.3372242953  0.092434224
AT5G18485  2.410101829  2.066731518 -1.2478922171 -0.0698802842 -0.579252970
AT5G61840  2.636485776  1.565164053 -1.6944773881 -0.0399183528  0.320076719
AT1G04430  1.560910470  1.598369097 -1.0121456555 -0.7187892369 -0.428565082
AT1G04910  1.904968699  1.565199963 -1.2611818211 -0.1963304538 -0.461726589
AT1G06890  2.173668191  1.533680863 -0.7538317230 -0.5043572172 -0.041135699
AT1G19360  3.162320598  1.896723217 -1.9895174132 -0.3684003076 -0.274269248
AT1G19430  0.708404955  1.762094079 -0.0208681213 -0.6054237209 -0.639573891
AT1G26850  0.619796282  2.201475157 -0.1490331473 -0.6442730697 -0.412519269
AT1G27930  0.555707593  1.854113803  0.0303548961 -0.7354022821 -0.475313445
AT1G29470  0.641126284  1.960892191 -0.1295967666 -0.6600896432 -0.461083667
AT1G29790  1.813132869  1.336125715 -1.3187005310 -0.0323250576 -0.222040290
AT1G31850  0.985352860  1.550902283  0.0479050257 -0.3028892237 -0.690301187
AT1G51540  1.846652456  2.195425138 -0.9627236977 -0.5468194194 -0.290515301
AT1G51630  0.557671236  1.853196037 -0.0009943414 -0.7428387144  0.058600552
AT1G55130  1.957525390  1.767673120 -1.5988432761 -0.9735944211  0.071344612
AT1G72480 -0.395145435  2.237370095  0.3786338856 -1.3643327788 -0.547020053
AT1G78240  2.867656897  1.717058334 -1.6121315934 -0.0527157454  0.152385810
AT2G01270  1.031014791  1.399167074 -0.6831840199 -0.9245578250 -0.503942202
AT2G01970  2.431722172  1.431992311 -1.0565241488 -0.5241283178 -0.040224501
AT2G35610  0.534454763  1.979968609  0.0662757214 -0.6132528244 -0.060495545
AT2G40280  0.449138527  1.623261142  0.4133738466 -0.4522521317 -0.735228928
AT3G13772  1.970440916  1.865058677 -1.6701296371 -0.8697723787 -0.187175557
AT3G16200  2.088508898  1.188987066 -1.0451806315 -0.3925271962  0.183078901
AT3G21190  0.414282669  1.653968089 -0.1108171344 -0.5984036231 -0.405218579
AT3G23300  2.010010922  1.521806384 -0.8117049300 -0.7134929021 -0.231504528
AT3G26370  1.709198637  1.831344316 -0.6630858533 -0.8970060210 -0.461661970
AT3G27220  1.452032514  1.679051688 -0.5448885493 -0.7320720476 -0.083626830
AT3G27230  2.630481484  1.875314428 -1.8768728236 -0.8038739066 -0.750391826
AT3G28480  2.162204395  1.146856258 -1.3244133521 -0.2735770636 -0.028745928
AT3G49720  2.030892227  2.018242401 -1.4532583373 -0.4856906866 -0.030442938
AT3G56750  1.618813810  2.321461787 -0.9974139361 -1.0910713946 -0.684240235
AT3G66654  1.978318602  1.400182571 -0.7688239111  0.7222479489 -0.666186154
AT4G00740  1.617043193  1.518205005 -1.1666827507  0.0430112191 -0.242528507
AT4G00750  0.418882598  1.812352101 -0.2398923701 -1.2897629778 -0.514776555
AT4G14360  2.223039126  2.085961208 -1.3711254662 -0.9069134378 -0.969913739
AT4G16120 -0.037959839  1.477240085 -0.0503997254 -0.2585274882 -0.188446156
AT4G17430  0.938455265  1.796971516 -0.7781571369 -0.6870514230 -0.321214774
AT4G18030  1.226017032  1.754175687 -0.5547466742 -0.6411770270 -0.217096520
AT4G38500  1.708334590  1.658220816 -1.0800315123 -0.5545782534 -0.064330552
AT4G39840  2.819238941  1.825786798 -1.6412410501 -1.0834459668 -0.288704518
AT5G04060  0.057329224  1.595323918  0.2867929543 -0.0728987447 -0.569458133
AT5G05170  0.811121007  1.580734551 -0.2147972513 -0.8396273400 -0.645517450
AT5G11730  0.386709033  2.181776581  0.4412107248 -0.1280256099 -0.407690822
AT5G14430  2.236607720  1.511046883 -1.5043258852 -0.0414426472 -0.194233565
AT5G20350  0.079109969  1.749285904  0.0182159970 -0.5986676587  0.241194202
AT5G35160  0.777430121  1.914365347 -0.3074388989 -0.4954762741 -0.333058276
AT5G37310  2.214671562  1.420005847 -1.2886733189 -0.5272528282 -0.549807584
AT5G43100 -0.729563679  1.449183546  0.3741096621  0.8956748367 -0.542542476
AT5G44790 -0.289190159  1.596423606  0.2589178286  0.4568742636 -0.334464607
AT5G61240  2.176551658  1.939007259 -1.2565815945  0.1352342169  0.070857119
AT2G28520 -0.561578289  1.698060468 -0.0106583732  0.6164357102 -0.556875748
AT1G03860  2.421714161 -0.066325248  0.1014359716 -0.1978134133  0.485270224
AT1G27390  2.732416868  0.111156545 -0.0334024752  0.0867567712 -0.008163107
AT1G47260  2.400469983 -0.387779382  0.3888808866 -0.1894731319  0.085068204
AT2G19080  3.039399974  0.192255721 -0.1847199573 -0.3590825443 -0.762562671
AT2G20800  2.599365451  0.377436754  0.0536123265 -0.6428539877 -0.395213135
AT2G21870  2.538766369 -0.076957702  0.0860654597 -0.0356387955 -0.003843476
AT2G29080  2.683151881 -0.082227120  0.0996991539  0.0077261013  0.229783857
AT2G33040  2.220232550 -0.013406746 -0.1850427569 -0.3020577540  0.059930645
AT2G33220  2.713264136 -0.023111963  0.6282865436  0.2250387069 -0.310364033
AT3G01280  3.054117009 -0.642801462 -0.0298499943 -0.5305551711  0.242350225
AT3G08580  2.177054285 -0.407636934  0.4949719528  0.3447839585  0.105607784
AT3G08950  2.855408420 -0.189947307  0.0362889927  0.1344211672  0.250772695
AT3G20000  2.967769474 -0.214170551 -0.4386569622 -0.0684534561 -0.142441078
AT3G52300  2.844464702 -0.230990039  0.2847611095 -0.1440792472  0.014728499
AT3G54110  2.663937663 -0.394134405  0.0250551636 -0.1081821640  0.086118938
AT4G01100  3.068374138 -0.151114783  0.0056987279 -0.3352048357 -0.358038640
AT4G28510  2.526000267 -0.405433819  0.4426065887 -0.2138984189  0.210665406
AT5G08040  2.885194955 -0.233976437 -0.1472179078 -0.2218800832 -0.145546034
AT5G09420  2.830657513 -0.791454529  0.3384232924 -0.3965737382  0.144513689
AT5G14040  2.973144126 -0.497362877  0.1883939550 -0.2394533439  0.165738583
AT5G15090  3.074271627 -0.574545592 -0.0256239884 -0.3685792296  0.017828866
AT5G19760  2.775362126 -0.141912782  0.1538719305 -0.1441485404  0.103286897
AT5G67500  2.872519960 -0.724949467  0.0030269830 -0.2378448111  0.118246687
NAD5       2.390194151 -0.303860926  0.1432386301  0.2803754729 -0.065966927
ORFB       2.547352019 -0.257310313  0.5071637981  0.0495762042 -0.027591294
AT1G15500  3.889884506 -1.012700513 -0.6202125964 -0.4775710563 -0.282531741
AT1G79560  3.992998257 -1.640125382 -0.2919140450 -0.6432985524  0.067830712
AT1G80300  4.040508994 -0.988418139 -0.6464001282 -0.1030862055 -0.379811018
AT2G16640  4.551437041 -1.056066432 -1.0194990757 -0.0431358058 -0.326273681
AT2G47840  4.169532217 -1.072794265 -0.3682741798 -0.1923736269 -0.724978975
AT3G08640  4.023356210 -1.306252239 -0.8252223962  0.5193466994 -0.331101982
AT3G23710  3.697990742 -1.288454107 -0.5630344316 -0.6119703808  1.158224953
AT3G46740  4.178095031 -1.296601178 -0.6258328225 -0.2754184069 -0.252591011
AT4G02510  3.678943909 -1.274802117 -0.6693563931 -0.9924098156 -0.054201578
AT4G32400  4.546244153 -1.495794048 -0.3255392231  0.1775303589 -0.379373032
AT4G33350  3.965937702 -1.796970322 -0.2687072065  0.5777316963  0.145705861
AT5G05000  4.093651555 -1.729017362 -0.5114751664 -0.3377327288 -0.065452078
RPS7-01    4.492790291 -1.909199038 -0.3546145922 -0.3580445156  0.188156072
AT1G06530  3.053085096 -0.341114950 -0.0522545901 -0.3329020470 -0.103202465
AT1G08480  2.630510812  0.201866094  0.2127947188 -0.1490507258  0.135489018
AT1G53760  2.609271443 -0.061558992 -0.0698744032 -0.3829010718  0.019496714
AT1G65540  2.917565430 -0.675726945  0.1890622173 -0.2662041588  0.430837760
AT2G16460  2.518025935 -0.345286347  0.1078082475 -0.5062197539  0.213492943
AT2G18330  2.934875132 -0.143763164 -0.3951704391 -0.9782636327  0.180501947
AT2G20940  2.732746404 -0.354291740  0.4182247874  0.1289611381  0.388585145
AT2G27730  2.277149904 -0.746314234  0.3885575414  0.3244319132  0.572141700
AT2G29990  2.953287516 -0.181024579  0.1292332159 -0.0465517563  0.065654422
AT2G42210  3.048563290 -0.295577304  0.1975878574 -0.0669571059  0.109609583
AT2G45060  2.387264555 -0.147392225  0.1803483020 -0.3776676003  0.345359343
AT3G02090  2.801112466 -0.509881165  0.0127222889 -0.3675540734  0.827259884
AT3G16480  3.022037259 -0.778894319  0.1420735241 -0.6382342458  0.690718116
AT3G51010  3.318489329 -0.479219872  0.1794047158 -0.3653191347 -0.156407457
AT3G58840  2.661996387 -0.167869934  0.0533928814 -0.4319218642 -0.144227628
AT3G59280  2.168963440 -0.072618621 -0.0889382143  0.2035028395  0.685075906
AT3G59820  2.228429796 -0.087565458  0.4357573924 -0.3859757394  0.022544693
AT4G05020  2.738276339 -0.150027713 -0.0837854192 -0.3858911600  0.044124149
AT4G26410  3.016600507 -0.390309722  0.1708807861 -0.0776666274  0.215350565
AT4G27585  2.479446181 -0.201817349  0.1768302667 -0.1885018400  0.205294149
AT4G28220  1.968780766 -0.188250649  0.2297336432  0.4384877756 -0.045121038
AT4G28390  2.871402534 -0.623595366  0.1428760131 -0.2806241223  0.509925045
AT4G29130  2.834215538 -0.271980922 -0.1362237947 -0.0378140036  0.001719823
AT4G29480  3.556637503 -0.307832454 -0.0255722788 -0.6145280254 -0.282006120
AT4G30010  3.245206698 -0.277511735  0.1872107594 -0.1962426242 -0.039026453
AT4G32470  2.498528743 -0.415334877  0.1070443333 -0.2486424574  0.397895817
AT4G39690  2.908032444 -0.859104963  0.0380910456 -0.2561581803  0.616590097
AT5G05520  3.379175131 -0.441495004 -0.2156377512 -0.3450859465 -0.291683347
AT5G12290  2.925440552 -0.188703170 -0.0623747898 -0.7627809199 -0.115093616
AT5G13490  2.847029856 -0.527796505  0.3698438131 -0.0408291637  0.483029964
AT5G13610  2.854266160 -0.239673014 -0.2172810742 -0.4453631352  0.885340651
AT5G16930  2.926734510 -0.235754093 -0.0258086739 -0.3899513968  0.321047503
AT5G18800  3.578521777 -0.083855258 -0.1881780000 -0.2211549304 -0.793319941
AT5G20090  1.974243928 -0.316658383  0.1008299606 -0.0118536194  0.349894872
AT5G23300  2.443373161 -0.241363460 -0.0326608700 -0.4265106730  0.519976366
AT5G26030  2.792892758 -0.535007532 -0.4862373088  0.4569935973 -0.260486757
AT5G27540  2.758260469 -0.254321534  0.0255871295 -0.1426676872 -0.089597934
AT5G43970  3.254319817 -0.463864010 -0.0066529678 -0.2323235415 -0.095593738
AT5G54100  2.905893917 -0.020899760 -0.0981977357 -0.4859212531 -0.199098239
AT5G55070  2.571495462 -0.080216066 -0.1150056682  0.0880633015 -0.019243501
AT5G58270  3.243397885 -0.554928639 -0.2370362828 -0.1614786950  0.075915998
AT1G06940  3.512570367 -1.116677696 -0.6551231123 -0.3589191934 -0.128775891
AT1G11320  4.680664560 -1.466863352 -0.9447548187 -0.4350601929 -0.323937220
AT1G42960  4.399374946 -2.174295573  0.4157874127 -0.5492124852 -0.010759672
AT2G37400  3.234862174 -1.820379384 -0.3792251195 -0.7014205729  0.527823188
AT2G37860  4.389578322 -1.301317128 -0.4529280890 -0.3824955533  0.108496688
AT2G44640  4.513159459 -1.094335545 -0.7345274559 -0.4590387378 -0.207242098
AT3G06960  4.007910814 -0.915331466 -0.7304563315 -0.5187649456 -0.621975972
AT3G45890  3.816432766 -1.032476646 -0.6090270166 -0.3438841781 -0.165499284
AT3G63170  3.886017482 -1.763085249 -0.8487262111 -0.1844307446  1.208074496
AT4G32250  3.981578922 -1.118024094 -0.7846400079 -0.2023405285 -0.249615508
AT4G39460  3.961775805 -0.810319433 -0.7948668357 -0.703896513


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO