R2 goodness of fit

Description

Flexible calculation of R2 goodness of fit.

Usage

## S4 method for signature 'pcaRes'
R2VX(object, direction = c("variables", "observations",
  "complete"), data = completeObs(object), pcs = nP(object))

Arguments

Value

A vector with R2 values

Author(s)

Henning Redestig

Examples

R2VX(pca(iris))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(pcaMethods)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'pcaMethods'

The following object is masked from 'package:stats':

    loadings

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/pcaMethods/R2VX-pcaRes-method.Rd_%03d_medium.png", width=480, height=480)
> ### Name: R2VX,pcaRes-method
> ### Title: R2 goodness of fit
> ### Aliases: R2VX R2VX,pcaRes-method
> 
> ### ** Examples
> 
> R2VX(pca(iris))
Sepal.Length  Sepal.Width Petal.Length  Petal.Width 
   0.9579017    0.8400028    0.9980931    0.9365937 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>